Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1562 134 1e-26 seq1808 125 7e-24 seq1287 84.2 2e-11 >seq1562 Length=24550 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 19380 CCACCTCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19439 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || |||| |||||||| || || || Sbjct 19440 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19499 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| ||| | |||||||| || ||||| Sbjct 19500 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19559 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 19560 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19606 >seq1808 Length=99283 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||||||||| ||||||||||||||| | ||| | || ||| Sbjct 19797 ACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCG 19856 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| ||||| |||| ||||| || || || || || || || || || ||| Sbjct 19857 AGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGA 19916 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | || ||||| || || || |||||||| ||||| || Sbjct 19917 ATCTTGGACTTGACGTTGTCAATAGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTG 19976 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| || ||||| Sbjct 19977 CCGGTGAGGGTCTTTACGAAGATCTGCAT 20005 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || ||||| || || |||||||| |||||||||||||| Sbjct 19551 CCTCCACGGAGGCGGAGAACCAGGTGAAGTGTAGATTCCTTCTGAATGTTGTAGTCCGAG 19610 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || ||||| ||||| |||||||| || || || Sbjct 19611 AGGGTCCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGG 19670 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | || || || || || || Sbjct 19671 ATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATAGTATCAGAAGACTCAACC 19730 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| |||||||| || || || | ||| || ||||| || ||||| Sbjct 19731 TCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19777 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| | ||| |||||||| ||||| |||||||||||||| | ||| || | Sbjct 19332 AGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGACAA-AGTCCG 19390 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || ||||| | || ||||| || || || ||||| || Sbjct 19391 GCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGGATGCCCTC 19450 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || ||||| ||| | ||||| || || || || ||||| || Sbjct 19451 CTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGATGACTCAACCTCGAGCGT 19510 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || || || || || || ||||| ||||| Sbjct 19511 AATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 19549 >seq1287 Length=86926 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | |||| | || || ||||| ||||| || || | Sbjct 66491 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66550 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || || || || || || || || || || || ||||| || Sbjct 66551 TCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 66610 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || ||||| || || || || || || || || | || || |||| Sbjct 66611 CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGA 66670 Query 134704 A 134704 | Sbjct 66671 A 66671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505383345445160