Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1963 242 4e-59 seq1786 107 2e-18 seq377 93.3 5e-14 >seq1963 Length=539952 Score = 242 bits (268), Expect = 4e-59 Identities = 1142/1783 (64%), Gaps = 57/1783 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| ||||| ||||||| || || |||| || || || ||| | || ||| Sbjct 430617 CCACAACACATGATCATGCGTGTCGCTGTCGGCATCTGGGGAGATGACGTCGAGAGAGTC 430558 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||||| | | || | |||| ||||| | || || | || Sbjct 430557 ATCGAGACGTACAACCTGATGTCCAACAAGT-TCTTCACCCACGCCTCGCCCACATTATT 430499 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || ||||| |||| |||||||| ||| | |||||||| Sbjct 430498 CAATGCTGGCACTCCCCAGCCCCAGCTGTCATCGTGCTTCCTCGTCGATATGAAGGAGGA 430439 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | || ||||| | || || | | ||||| ||||| ||| ||| || Sbjct 430438 CAGCATTGAGGGCATCTACGACACGCTCAAGACCTGTGCCATGATCTCCAAGATGGCGGG 430379 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 ||||| || | || |||| | | | |||| ||| || ||| || || Sbjct 430378 AGGTATCGGCCTCAACGTCCACCGTATCCGTGCCACCGG--CTCATACATCGCTGGTACT 430321 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || |||| || | || ||| | || || |||||| || || || ||| Sbjct 430320 AACGGCACTTCCAATGGCATCACCCCCATGTTGCGGGTCTTTAACAATACTGCCCGATAT 430261 Query 104579 GTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || ||||| | | ||| || | |||| |||| ||||||||||| Sbjct 430260 GTCGACCA----GGGCGGCAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATG 430205 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || || | ||||| ||||| |||| ||||| || | |||||| || Sbjct 430204 GCACGCAGACGTCTTCGAGTTTCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCG 430145 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| ||| || |||||||| || ||||| ||||||||| | || ||| | Sbjct 430144 AGCCCGTGATCTTTTCCTTGCACTCTGGATCCCCGATCTGTTCATGAAGCGGGTCGAGAA 430085 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| | ||| | ||| | || || | || ||||| || |||| | || Sbjct 430084 GAACGGCGAGTGGACCCTCATGTGCCCCAATGAGTGCCCTGGACTTGCCGACTGCTACGG 430025 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 |||||||||||| || || ||| |||||||| |||| ||| | ||| || ||| Sbjct 430024 TGAGGAGTTTGAGGCTCTCTACGAGAAGTACGA-GAAGGAGGGC-CGCGGTCGCAAGACC 429967 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || || | || | ||||| | || || ||| || |||| ||||||||||| | || Sbjct 429966 ATG-AAGGCCCAGAAGTTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCC 429908 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||||||| | |||| |||||| || || || || ||||| || Sbjct 429907 CTTCATGCTATACAAAGACCACGCGAACCGAAAGAGCAACCAGAAAAACCTGGGTACCAT 429848 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || || || ||||| || || ||| | || | | | |||||| ||||| Sbjct 429847 CCGCAGCTCAAACCTCTGCACTGAGATCATCGAGTACTGTGCCCCTGATGAGGTCGCTGT 429788 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTT 105106 || ||||| || || || || || || ||| ||||| | ||||| || | Sbjct 429787 TTGCAACCTGGCCTCTATTGCCCTGCCGGCGTACGTGGA--CTATGACAACAACTGCTAC 429730 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 | | || | | || || ||||| | ||| | ||||| |||| | ||| Sbjct 429729 AACTTCCAACAGTTGCATGAGGTTACCCAGGTCGTCGTCCGCAACCTGAACAAGATCATT 429670 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || ||||| || || || || || ||| |||| || || ||| Sbjct 429669 GATGTCAACCACTACCCAGTCAAGGAGGCCTACAACAGCAACATGCGACATCGACCGATT 429610 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTT-GA 105282 ||| | ||||| |||||||| || |||| ||| | ||| || | || ||| || Sbjct 429609 GGTGTTGGTGTCCAGGGTCTTGCTGATGCGTTCTTGGCCCTTCGT----ATGCCTTTCGA 429554 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 ||| ||| || || | || || || || ||||| || || ||||| ||||| Sbjct 429553 CTCCCCCGAGGCCCGTGAGCTGAACAAGCAGATCTTCGAGACTATCTACCACGCTGCTCT 429494 Query 105343 TGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | || ||| || | || |||| || || || || | || | ||||| Sbjct 429493 TACCGC---ATCAAGCGATATTGCCAAGGTGGAGGGCCCGTACAAGACGTACGAGGGCAG 429437 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACT 105458 ||| | ||||| || | ||||| || || |||| |||| || | ||| | | || Sbjct 429436 TCCGGTCTCACAGGGCATCCTTCAGTTCGACATGT-GGAATGTCAAGCCATCCGCGCTCT 429378 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 ||||||||||| |||||||| |||||||||| ||| | || ||||| | | Sbjct 429377 GGGACTGGGAAGCCCTCAAGGACAAGATCAAGGAGACCGGTGTCCGCAACAGCTTGTTAC 429318 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 |||| |||||||| || || |||||| | || ||| |||| || || || ||||| || | Sbjct 429317 TGGCGCCAATGCCCACTGCATCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTCGAGC 429258 Query 105579 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC- 105637 | ||||| | |||||||| | | || | ||||| || ||||| | |||||||| Sbjct 429257 CATACACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAGTTCCAGGTTGTCAACC 429198 Query 105638 --AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 105695 || |||| | ||| | | |||| | || | ||||| ||| |||||| | | Sbjct 429197 CTTGGCTTCTCAGG---GACTTGACAGAGCTCGGCTTGTGGTCTGAGGCCATGAAGAACC 429141 Query 105696 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 || | | || ||||||||| || || ||| || || ||| || ||| Sbjct 429140 GTATCATCGCCGAGGATGGTTCCATACAGAACATTCCCAGCATCCCGGCTGACATCAAGG 429081 Query 105756 AGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATC 105815 ||||| || |||||||||||| || | | | | | ||||| || || | Sbjct 429080 CCCTGTACAAGACCGTTTGGGAAATCTCTCAGAGGACTATTGTGCAGATGGCTGCTGACC 429021 Query 105816 GTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATG-GAAAGTCCAACGA 105872 ||||| ||||| || | |||| ||| | || || |||| || || || | | Sbjct 429020 GTGGTGCATTCATCGACC--AGTCCCAGTCACTCAACATCCACATGCGAGAG-CCGTCCA 428964 Query 105873 TGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 105932 || |||| || | ||||| | | | |||||| || ||||| || || |||| Sbjct 428963 TGGGCAAGATCACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTCAAGACTGGCATGT 428904 Query 105933 ATTACCTCCGATCTAAGGCAAAGGCGCGC-CCAATTCAGTTCA 105974 | |||||||| || ||||| || ||| || ||||| |||| Sbjct 428903 ACTACCTCCGCACTCAGGCAGCTGC-CGCACCCATTCAATTCA 428862 >seq1786 Length=271448 Score = 107 bits (118), Expect = 2e-18 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793 |||||| || || | ||||| || || |||||| |||||||| || || |||| Sbjct 165254 AGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGG----ATCCAGGACCGCG 165309 Query 94794 TT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 ||| ||| ||||||| | || ||||| || ||||||||||||||| | Sbjct 165310 AGTCCACCTATGCCCAGCGACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCG 165369 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | | ||| | || | |||||||||||||| || |||||||| || || ||||| Sbjct 165370 GCGCATTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCT 165429 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||| || ||||||||||| ||||| || ||| Sbjct 165430 CCAACGAACTGATCTCTCGTGATGAGGGTCTGCAC 165464 >seq377 Length=268055 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/233 (70%), Gaps = 16/233 (7%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||||||||||||||||||||| || ||||| || || | ||| || | || || Sbjct 88939 GGCATCAATCTCATCAATGAAAACAATGCAAGGGGCGTTCTTGCGTGCTTGCGCGAACAG 88998 Query 9763 ATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 9819 ||||| ||| ||| ||| || ||||| |||||||| ||||| || | |||| Sbjct 88999 GTCCCG--CACTCTTGAGGCACCGACACCGACAAACATTTCCACGAACT------CGGAT 89050 Query 9820 ACATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 || || || ||| || || |||||||| ||| |||| |||||| || ||| Sbjct 89051 CCACTGACGCTGAAGAACGGCACCCCCGATTCACCGGCAGTGGCCTTGGCGAGTAGTGTC 89110 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| || ||||| || | | || |||||| || |||||||| ||||| Sbjct 89111 TTACCAGTTCCTGGGGGCCCAGACAAGATGGCACCGCGAGGAATCTTTGCGCC 89163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583243426118920