Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1808 147 7e-30 seq2022 116 1e-20 seq1643 96.9 1e-14 >seq1808 Length=99283 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | ||||| || ||||| ||||| || || ||||| || || || Sbjct 19547 CATGCCTCCACGGAGGCGGAGAACCAGGTGAAGTGTAGATTCCTTCTGAATGTTGTAGTC 19606 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||| || ||||| || |||||||||||||| | || ||||| ||||| Sbjct 19607 CGAGAGGGTCCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGG 19666 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || |||||||| || || | || ||||| || || | |||||| | || Sbjct 19667 AGGGATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATAGTATCAGAAGACTC 19726 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || |||| ||||| || || || || || || || |||||||| Sbjct 19727 AACCTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19777 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || ||||| || || || || ||||| || || || Sbjct 19775 CATACCACCACGCAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTC 19834 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || ||||| || ||||||||||| || || || || ||||| Sbjct 19835 GGAGAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGG 19894 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || || || ||||| | ||| || | || Sbjct 19895 GGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGACTC 19954 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| || || ||||| || |||||||| Sbjct 19955 AACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 20005 Score = 131 bits (144), Expect = 5e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | || || || ||||| || ||||| || || ||||| Sbjct 19323 CCACCACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAC 19382 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || || ||||| || || || ||||| || || || |||||||| || || || Sbjct 19383 AAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGG 19442 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || |||||||| || | || || || ||||||| || |||| ||||| Sbjct 19443 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGATGACTCAACC 19502 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| ||||| || || | || || |||||||||||||| Sbjct 19503 TCGAGCGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 19549 >seq2022 Length=14139 Score = 116 bits (128), Expect = 1e-20 Identities = 430/666 (65%), Gaps = 21/666 (3%) Strand=Plus/Plus Query 349268 ATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAG 349327 |||||||| || ||||| ||| | || || || || | ||||||||| ||||| || ||| Sbjct 10672 ATTGCAAACGACCAAGGAAACCGGACCACACCTTCCTTCGTTGCATTCACCGACACCGAG 10731 Query 349328 CGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTT 349387 ||| |||| || ||| | || || || || | || || || | || || || || Sbjct 10732 CGTCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACAACACCGTCTTC 10791 Query 349388 GATGCTAAGCGACTTATTGGTAG-AAGTTTT-----TCTGACAAATCTACACAATCTGAT 349441 || || ||||| | ||||| | ||||| ||||| || || | || Sbjct 10792 GACGCGAAGCGGTTGATTGGCCGTAAGTTCCAGGACTCTGAGG--TC----CAGGCCGAC 10845 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || ||||| || | | || | | ||| |||| || || | || |||||| Sbjct 10846 ATGAAGCACTTTCCCTTCAAGATCGT-CGAGAAG--GGTGGCAAGCCCAACATCGAGGTT 10902 Query 349502 GAATATAAAGGTGAA-CAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTA 349558 || | || || || | || || || |||| || || || || || ||||| || Sbjct 10903 GAGTTCAAGGGCGAGTCCAAGACC---TTCACCCCTGAGGAGATCTCCTCCATGGTCTTG 10959 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | || || | || | || | || || | | || || || Sbjct 10960 ACCAAGATGCGTGAGACCGCCGAGTCTTACCTCGGCGGCACCGTCAACAACGCCGTCATC 11019 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || ||||| || || || |||||||| || || || || || || |||| Sbjct 11020 ACCGTCCCGGCCTACTTCAACGACTCCCAGCGTCAAGCCACCAAGGACGCCGGTCTCATT 11079 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| | || || || || ||||| || || || ||||| || || Sbjct 11080 GCTGGCCTCAACGTTCTCCGTATCATCAACGAGCCCACAGCCGCTGCCATTGCCTACGGT 11139 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | || || || | || || || || | |||||||||||| Sbjct 11140 CTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGACCTGGGTGGTGGTACT 11199 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || | || ||||| || || || || || | || || ||| Sbjct 11200 TTCGATGTGTCGCTCCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGT 11259 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || || || || || || || || || || ||||| || |||||||| ||| Sbjct 11260 GACACTCACCTGGGAGGCGAGGACTTCGACAACCGCCTCGTCAACCACTTTGTTAACGAA 11319 Query 349919 TTTAAG 349924 || ||| Sbjct 11320 TTCAAG 11325 >seq1643 Length=209494 Score = 96.9 bits (106), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || |||||||||| ||||||||| || || Sbjct 156150 CGAGGCACACCGAGAGTGACGTTC---TTGGAGGCAACACCAGTAAAGTGGAATGTGTTG 156094 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||| || || |||||||| |||| || || ||||||||| Sbjct 156093 AGTGTCATCTGTGTAGCAGGCTCTCCGATGGACTGCGCCGCAAGCACCCCCACCATTTCT 156034 Query 377578 CCAGGATTGACAAT 377591 ||||| ||||| || Sbjct 156033 CCAGGGTTGACCAT 156020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515208135968549