Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13]
2,383 sequences; 47,325,858 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1963 266 4e-66
seq510 141 1e-28
seq1786 113 5e-20
>seq1963
Length=539952
Score = 266 bits (294), Expect = 4e-66
Identities = 511/749 (68%), Gaps = 6/749 (1%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||||| | || ||| || || ||| | | | ||| |||||||||
Sbjct 430604 TCATGCGTGTCGCTGTCGGCATCTGGGGAGATGACGTCGAGAGAGTCATCGAGACGTACA 430545
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | |||| ||| || |||||| |||| || | ||||| ||||| ||
Sbjct 430544 ACCTGATGTCCAACAAGTTCTTCACCCACGCCTCGCCCACATTATTCAATGCTGGCACTC 430485
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| || ||| |||| |||||||| || | |||||||| ||| || || ||||
Sbjct 430484 CCCAGCCCCAGCTGTCATCGTGCTTCCTCGTCGATATGAAGGAGGACAGCATTGAGGGCA 430425
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| ||||||||| |||||| ||||||||| | |||| |||||||| ||
Sbjct 430424 TCTACGACACGCTCAAGACCTGTGCCATGATCTCCAAGATGGCGGGAGGTATCGGCCTCA 430365
Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| || | ||| |||||| | |||| || ||| || || |||||| || |
Sbjct 430364 ACG--TCCACCGTATCCGTGCCACCGGCTCATACATCGCTGGTACTAACGGCACTTCCAA 430307
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| ||| || ||| | || ||||| ||||| || ||||| || ||| ||||||| ||
Sbjct 430306 TGGCATCACCCCCATGTTGCGGGTCTTTAACAATACTGCCCGATATGTCGACCAGGGCGG 430247
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | ||||| |||||||| ||||| |||||||| ||| | | ||
Sbjct 430246 CAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATGGCACGCAGACGTCTTCGA 430187
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
|||||| || ||||| ||| || || | || ||||| || |||||| || ||
Sbjct 430186 GTTTCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGAGCCCGTGATCTTTTCCT 430127
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| || ||||| || || || |||||| | ||| |||||| ||| |||||| |||
Sbjct 430126 TGCACTCTGGATCCCCGATCTGTTCATGAAGCGGGTCGAGAAGAACGGCGAGTGGACCCT 430067
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
|||||||| || |||||||| || || | | || |||||||||||||||| | |
Sbjct 430066 CATGTGCCCCAATGAGTGCCCTGGACTTGCCGACTG-CTACGGTGAGGAGTTTGAGGCTC 430008
Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849
| || || ||||| |||||||| |||| | ||||| | || | |
Sbjct 430007 TCTACGAGAAGTACGAGAAGGAGGGCCGCGGTCGCAAGACCATGAAGGCCCAGAAGTTGT 429948
Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909
|| | || |||||| || ||| ||||| || | || | |||| ||||| ||
Sbjct 429947 GGTACGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTATACAAAGACC 429888
Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
| ||| |||||||||||||| |||
Sbjct 429887 ACGCGAACCGAAAGAGCAACCAGAAAAAC 429859
Score = 113 bits (124), Expect = 5e-20
Identities = 301/447 (67%), Gaps = 11/447 (2%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||| | || | ||||||||||||| || || || || | |||||| ||||||||
Sbjct 429333 CGCAACAGCTTGTTACTGGCGCCAATGCCCACTGCATCCACCTCGCAGATCCTGGGCAAC 429274
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||||| ||| || || || || |||
Sbjct 429273 AACGAGTGCTTCGAGCCATACACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAG 429214
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG-CAGAAGATCAACAAGTGGAACCC 55662
|| | ||||| || ||| |||| || |||| | || | ||||
Sbjct 429213 TTCCAGGTTGTCAACCCTTGGCTTCTCAGGGACTTGACAGA-GCTCGGCTTGTGGTCTGA 429155
Query 55663 GCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG--AGATTCC 55719
| || |||| ||| | || || | || ||| | ||||| | || |||
Sbjct 429154 GGCCATGAAGAACCGTATCATCGCCGAG-GATGGTTCCATACAGAACATTCCCAGCATCC 429096
Query 55720 TCTGC-GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777
| || | | |||||| | ||| ||| || ||||| || | |||| || | | |
Sbjct 429095 -CGGCTGACATCAAGGCCCTGTACAAGACCGTTTGGGAAATCTCTCAGAGGACTATTGTG 429037
Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837
| ||| |||||| |||||||| | |||||||||||||||||| || |||||| ||||
Sbjct 429036 CAGATGGCTGCTGACCGTGGTGCATTCATCGACCAGTCCCAGTCACTCAACATCCACATG 428977
Query 55838 -GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896
||| | || || ||| |||| | | | ||||| || ||| |||||| || ||
Sbjct 428976 CGAG-AGCCGTCCATGGGCAAGATCACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCT 428918
Query 55897 CAAGACGGGTATGTACTATCTGCGGAC 55923
|||||| || |||||||| || || ||
Sbjct 428917 CAAGACTGGCATGTACTACCTCCGCAC 428891
>seq510
Length=270442
Score = 141 bits (156), Expect = 1e-28
Identities = 199/277 (72%), Gaps = 8/277 (3%)
Strand=Plus/Minus
Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357
|||||||||||| |||||||||| |||||| | ||| | ||||| |||||||| | |||
Sbjct 15883 TAGGCGAGTGAAGATGTAACGAGCGCTTGCCGAATCACTACCACCGGCAAGACGAGAACC 15824
Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| | || || ||||||| | ||| | |||||| | || |||||||| || ||
Sbjct 15823 GAAATTACCGCTGGGCTCCAGAATGTTTATGTTGTTCGATCCAACAAAGTTCTGGGC--- 15767
Query 117418 GTTGA-CAATCGTACCTTGGAGGCTCG---CCTCACCATGGTGATACGCCGTCTGCTCCG 117473
| || |||| | || | || | |||||||| || || || || || || |
Sbjct 15766 -TAGACCAATGATTGTCTGCTGCAACGAGACTTCACCATGATGGTAGGCGGTTTGTTCAG 15708
Query 117474 CCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGG 117533
||||| || |||| || | | |||||| |||| ||||| ||| ||||| |||||
Sbjct 15707 AGACGTATCCAGCCAACTCAACAACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGG 15648
Query 117534 CATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
| || || ||||||||||| | |||||||| ||| ||
Sbjct 15647 CGTAGATGACCTTGCGCTGTCCTGGCTTCAAACCGTC 15611
Score = 136 bits (150), Expect = 4e-27
Identities = 207/292 (71%), Gaps = 2/292 (1%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||||||||||| || | ||| |||| ||| | ||||| || || || | || ||
Sbjct 15879 CGAGTGAAGATGTAACGAGCGCTTGCCGAATCACTACCACCGGCAAGACGAGAACCGAAA 15820
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| || |||||| || | ||| | |||||| | || || || ||||| || | |
Sbjct 15819 TTACCGCTGGGCTCCAGAATGTTTATGTTGTTCGATCCAACAAAGTTCTGGGCTAGACCA 15760
Query 152146 ACAATCGTGCCCTGCAGACTCG-CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204
| || || ||||| || | ||||||| || || || || || || || | || |||
Sbjct 15759 ATGATTGTCTGCTGCA-ACGAGACTTCACCATGATGGTAGGCGGTTTGTTCAGAGACGTA 15701
Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264
||| ||||||| | |||||| ||||| |||||| ||| ||||| |||||||| ||
Sbjct 15700 TCCAGCCAACTCAACAACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGGCGTAGAT 15641
Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316
||||||||||| ||| ||||||||||| || ||| ||||| || |||
Sbjct 15640 GACCTTGCGCTGTCCTGGCTTCAAACCGTCTACAACGGATGGAATGGACCGC 15589
>seq1786
Length=271448
Score = 113 bits (124), Expect = 5e-20
Identities = 300/449 (67%), Gaps = 12/449 (3%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| |||||||| ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 165763 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 165704
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580
||||||| ||||| | ||||| | | | | | |||| | ||| |||||
Sbjct 165703 AAGTCGAAGGGGTTGGACGACTTGTAAACCTTGTCGT-TGCCCAGGGCGA-CCAGGAGGC 165646
Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640
| || || ||||||| ||||||||| |||| | | |||||||| ||| |
Sbjct 165645 GGTCGGCGACAAATTCGATGTACTGCTTCATGAGGTTAGAGTTCATGCCGAGGAGGGCAC 165586
Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGT 74700
| ||||| |||||||| | ||| || |||| | || |||| || || | |
Sbjct 165585 ATGGCAGAGCCTCGGTCAAAAATTCCTTCTCGATGGCGACAGCCTCGGTGATGATGTCCT 165526
Query 74701 GAATGT-CT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAAC 74756
| | | || ||| || | || | | ||||| ||| | ||| | || ||| ||
Sbjct 165525 GGACGCGCTGCTTGCTTGGTCGGTTCT---TGAGGTGGGAGAACAGCAGACA-GGCGAAG 165470
Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816
|| ||| || ||||| | |||| ||| || || || | |||||||||||
Sbjct 165469 TCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAGAAGGTCAGGCCAGGCATG 165410
Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876
|| ||||||||||| | ||| ||||||| | ||| | || ||||||||||| || |||
Sbjct 165409 AGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCGCTGAAGAAGATACCCTCG 165350
Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGC 74905
|| |||||||| || || || || ||
Sbjct 165349 ACGGCGGCAAAGGCAACCAGTCGCTGGGC 165321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547199699803400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |