Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1963 266 4e-66 seq510 141 1e-28 seq1786 113 5e-20 >seq1963 Length=539952 Score = 266 bits (294), Expect = 4e-66 Identities = 511/749 (68%), Gaps = 6/749 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||| || || ||| | | | ||| ||||||||| Sbjct 430604 TCATGCGTGTCGCTGTCGGCATCTGGGGAGATGACGTCGAGAGAGTCATCGAGACGTACA 430545 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | |||| ||| || |||||| |||| || | ||||| ||||| || Sbjct 430544 ACCTGATGTCCAACAAGTTCTTCACCCACGCCTCGCCCACATTATTCAATGCTGGCACTC 430485 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || ||| |||| |||||||| || | |||||||| ||| || || |||| Sbjct 430484 CCCAGCCCCAGCTGTCATCGTGCTTCCTCGTCGATATGAAGGAGGACAGCATTGAGGGCA 430425 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| |||||| ||||||||| | |||| |||||||| || Sbjct 430424 TCTACGACACGCTCAAGACCTGTGCCATGATCTCCAAGATGGCGGGAGGTATCGGCCTCA 430365 Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | ||| |||||| | |||| || ||| || || |||||| || | Sbjct 430364 ACG--TCCACCGTATCCGTGCCACCGGCTCATACATCGCTGGTACTAACGGCACTTCCAA 430307 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| ||| || ||| | || ||||| ||||| || ||||| || ||| ||||||| || Sbjct 430306 TGGCATCACCCCCATGTTGCGGGTCTTTAACAATACTGCCCGATATGTCGACCAGGGCGG 430247 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | ||||| |||||||| ||||| |||||||| ||| | | || Sbjct 430246 CAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATGGCACGCAGACGTCTTCGA 430187 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 |||||| || ||||| ||| || || | || ||||| || |||||| || || Sbjct 430186 GTTTCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGAGCCCGTGATCTTTTCCT 430127 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || ||||| || || || |||||| | ||| |||||| ||| |||||| ||| Sbjct 430126 TGCACTCTGGATCCCCGATCTGTTCATGAAGCGGGTCGAGAAGAACGGCGAGTGGACCCT 430067 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||| || |||||||| || || | | || |||||||||||||||| | | Sbjct 430066 CATGTGCCCCAATGAGTGCCCTGGACTTGCCGACTG-CTACGGTGAGGAGTTTGAGGCTC 430008 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 | || || ||||| |||||||| |||| | ||||| | || | | Sbjct 430007 TCTACGAGAAGTACGAGAAGGAGGGCCGCGGTCGCAAGACCATGAAGGCCCAGAAGTTGT 429948 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| ||||| || | || | |||| ||||| || Sbjct 429947 GGTACGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTATACAAAGACC 429888 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | ||| |||||||||||||| ||| Sbjct 429887 ACGCGAACCGAAAGAGCAACCAGAAAAAC 429859 Score = 113 bits (124), Expect = 5e-20 Identities = 301/447 (67%), Gaps = 11/447 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | || | ||||||||||||| || || || || | |||||| |||||||| Sbjct 429333 CGCAACAGCTTGTTACTGGCGCCAATGCCCACTGCATCCACCTCGCAGATCCTGGGCAAC 429274 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct 429273 AACGAGTGCTTCGAGCCATACACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAG 429214 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG-CAGAAGATCAACAAGTGGAACCC 55662 || | ||||| || ||| |||| || |||| | || | |||| Sbjct 429213 TTCCAGGTTGTCAACCCTTGGCTTCTCAGGGACTTGACAGA-GCTCGGCTTGTGGTCTGA 429155 Query 55663 GCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG--AGATTCC 55719 | || |||| ||| | || || | || ||| | ||||| | || ||| Sbjct 429154 GGCCATGAAGAACCGTATCATCGCCGAG-GATGGTTCCATACAGAACATTCCCAGCATCC 429096 Query 55720 TCTGC-GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 | || | | |||||| | ||| ||| || ||||| || | |||| || | | | Sbjct 429095 -CGGCTGACATCAAGGCCCTGTACAAGACCGTTTGGGAAATCTCTCAGAGGACTATTGTG 429037 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 | ||| |||||| |||||||| | |||||||||||||||||| || |||||| |||| Sbjct 429036 CAGATGGCTGCTGACCGTGGTGCATTCATCGACCAGTCCCAGTCACTCAACATCCACATG 428977 Query 55838 -GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 ||| | || || ||| |||| | | | ||||| || ||| |||||| || || Sbjct 428976 CGAG-AGCCGTCCATGGGCAAGATCACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCT 428918 Query 55897 CAAGACGGGTATGTACTATCTGCGGAC 55923 |||||| || |||||||| || || || Sbjct 428917 CAAGACTGGCATGTACTACCTCCGCAC 428891 >seq510 Length=270442 Score = 141 bits (156), Expect = 1e-28 Identities = 199/277 (72%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357 |||||||||||| |||||||||| |||||| | ||| | ||||| |||||||| | ||| Sbjct 15883 TAGGCGAGTGAAGATGTAACGAGCGCTTGCCGAATCACTACCACCGGCAAGACGAGAACC 15824 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| | || || ||||||| | ||| | |||||| | || |||||||| || || Sbjct 15823 GAAATTACCGCTGGGCTCCAGAATGTTTATGTTGTTCGATCCAACAAAGTTCTGGGC--- 15767 Query 117418 GTTGA-CAATCGTACCTTGGAGGCTCG---CCTCACCATGGTGATACGCCGTCTGCTCCG 117473 | || |||| | || | || | |||||||| || || || || || || | Sbjct 15766 -TAGACCAATGATTGTCTGCTGCAACGAGACTTCACCATGATGGTAGGCGGTTTGTTCAG 15708 Query 117474 CCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGG 117533 ||||| || |||| || | | |||||| |||| ||||| ||| ||||| ||||| Sbjct 15707 AGACGTATCCAGCCAACTCAACAACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGG 15648 Query 117534 CATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | || || ||||||||||| | |||||||| ||| || Sbjct 15647 CGTAGATGACCTTGCGCTGTCCTGGCTTCAAACCGTC 15611 Score = 136 bits (150), Expect = 4e-27 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||||||||| || | ||| |||| ||| | ||||| || || || | || || Sbjct 15879 CGAGTGAAGATGTAACGAGCGCTTGCCGAATCACTACCACCGGCAAGACGAGAACCGAAA 15820 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || |||||| || | ||| | |||||| | || || || ||||| || | | Sbjct 15819 TTACCGCTGGGCTCCAGAATGTTTATGTTGTTCGATCCAACAAAGTTCTGGGCTAGACCA 15760 Query 152146 ACAATCGTGCCCTGCAGACTCG-CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 | || || ||||| || | ||||||| || || || || || || || | || ||| Sbjct 15759 ATGATTGTCTGCTGCA-ACGAGACTTCACCATGATGGTAGGCGGTTTGTTCAGAGACGTA 15701 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 ||| ||||||| | |||||| ||||| |||||| ||| ||||| |||||||| || Sbjct 15700 TCCAGCCAACTCAACAACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGGCGTAGAT 15641 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 ||||||||||| ||| ||||||||||| || ||| ||||| || ||| Sbjct 15640 GACCTTGCGCTGTCCTGGCTTCAAACCGTCTACAACGGATGGAATGGACCGC 15589 >seq1786 Length=271448 Score = 113 bits (124), Expect = 5e-20 Identities = 300/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 165763 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 165704 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||||||| ||||| | ||||| | | | | | |||| | ||| ||||| Sbjct 165703 AAGTCGAAGGGGTTGGACGACTTGTAAACCTTGTCGT-TGCCCAGGGCGA-CCAGGAGGC 165646 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 | || || ||||||| ||||||||| |||| | | |||||||| ||| | Sbjct 165645 GGTCGGCGACAAATTCGATGTACTGCTTCATGAGGTTAGAGTTCATGCCGAGGAGGGCAC 165586 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGT 74700 | ||||| |||||||| | ||| || |||| | || |||| || || | | Sbjct 165585 ATGGCAGAGCCTCGGTCAAAAATTCCTTCTCGATGGCGACAGCCTCGGTGATGATGTCCT 165526 Query 74701 GAATGT-CT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAAC 74756 | | | || ||| || | || | | ||||| ||| | ||| | || ||| || Sbjct 165525 GGACGCGCTGCTTGCTTGGTCGGTTCT---TGAGGTGGGAGAACAGCAGACA-GGCGAAG 165470 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || ||| || ||||| | |||| ||| || || || | ||||||||||| Sbjct 165469 TCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAGAAGGTCAGGCCAGGCATG 165410 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 || ||||||||||| | ||| ||||||| | ||| | || ||||||||||| || ||| Sbjct 165409 AGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCGCTGAAGAAGATACCCTCG 165350 Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGC 74905 || |||||||| || || || || || Sbjct 165349 ACGGCGGCAAAGGCAACCAGTCGCTGGGC 165321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199699803400