Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1963 268 1e-66 seq1808 188 8e-43 seq1562 154 2e-32 seq1287 131 2e-25 seq510 131 2e-25 seq1786 102 9e-17 >seq1963 Length=539952 Score = 268 bits (296), Expect = 1e-66 Identities = 812/1237 (66%), Gaps = 33/1237 (3%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| ||| | |||||||| || ||||| ||| || |||||| |||||| Sbjct 429400 CCACATGTCGAACTGAAGGATGCCCTGTGAGACCGGACTGCCCTCGTACGTCTTGTACGG 429459 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||||| |||||| | || | || | |||| || ||||| || || ||| || Sbjct 429460 GCCCTCCACCTTGGCAATATCGCTTGATGCGGTAAGAGCAGCGTGGTAGATAGTCTCGAA 429519 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 || |||||||| | || |||| ||| |||||| | || | | || ||| Sbjct 429520 GATCTGCTTGTTCAGCTCACGGGCCTCGGGGGAGTCGAAAGGCATACGAAGGGCCAAGAA 429579 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCT 80779 | | ||||| || ||||| || || | | ||||| || || ||| |||| | | | | Sbjct 429580 CGCATCAGCAAGACCCTGGACACCAACACCAATCGGTCGATGTCGCATGTTGCTGTTG-T 429638 Query 80780 CGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAA 80839 ||||||| | |||||| ||| ||| |||| |||||||||||| || | Sbjct 429639 AGGCCTCCTTGACTGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACGACGA 429698 Query 80840 CCCGTGTAACATCATGAAGTTTCTGAAAGTCG----AATTG--GTTCCCCTTCACAAATG 80893 || | ||||| ||||| | | || |||| | | ||| || | ||| | | Sbjct 429699 CCTGGGTAACCTCATGCAACTGTTGGAAGTTGTAGCAGTTGTTGTCATAGTCCACGTACG 429758 Query 80894 CCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA---GCATCTGTAAACT 80950 |||| ||| | || ||||| ||||| || || ||||| ||| ||| | || ||| Sbjct 429759 CCGGCAGGGCAATAGAGGCCAGGTTGCAAACAGCGACCTCATCAGGGGCA-CAGT--ACT 429815 Query 80951 CGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACT 81010 ||| ||| || ||||| | || || || |||||||||||||||||||| || Sbjct 429816 CGATGATCTCAGTGCAGAGGTTTGAGCTGCGGATGGTACCCAGGTTTTTCTGGTTGCTCT 429875 Query 81011 TGGCGTT-GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 | ||| || | ||| ||||| |||| | ||| | || |||||| ||| | || | Sbjct 429876 TTCGGTTCGCGTG-GTCTTTGTATAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCG 429934 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 |||||||||| ||| | || | ||||| | |||||| ||| || | | Sbjct 429935 AGGATGGCGTACCACAACTTCTGGGCCTTCATGGTCTTGCGACCGCGGCCCTCCTTCTCG 429994 Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTC 81188 ||||| |||| | || |||| |||||| | || || | || | |||||||| Sbjct 429995 TACTTCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAG-TCGGCAAGTCCAGGGCACTC 430053 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 || |||||||| ||| ||| ||| || ||||| || ||||||||| || || Sbjct 430054 ATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCATGAACAGATCGGG 430113 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 ||||||||| || ||| || || ||| || |||||| | || ||||| ||| Sbjct 430114 GATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTGCCGTGGTTCTTGCG 430173 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 || || ||||| || | || ||| || ||||||||||| || || | |||| | || Sbjct 430174 CAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACC 430233 Query 81369 CTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAA 81422 | |||| ||| ||||||| ||| || |||||||| |||||| || ||||| Sbjct 430234 ---GGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAGTATTGTTAAAGACCCGCAA 430290 Query 81423 CATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG 81482 ||| ||| |||| |||| || ||||| ||||| |||| || || |||| || Sbjct 430291 CATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAGCCGGTGGCACG 430350 Query 81483 --CACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGG 81540 || || ||| || ||||| || || | | ||| || ||| ||||| Sbjct 430351 GATACGGTGGACGTTG--AGGCCGATACCTCCCGCCATCTTGGAGATCATGGCACAGGTC 430408 Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600 || | || || || || ||||| ||||| || | ||||| || | | ||| || | Sbjct 430409 TTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGAGGAAGCACGAT 430468 Query 81601 GACATCTGAGGGCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATA 81659 |||| ||| ||||| | ||| |||||||| | ||| || | ||||| |||| | Sbjct 430469 GACAGCTG-GGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGTGGGTGAAGAA 430527 Query 81660 ACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACC 81719 ||| |||||||||| || || || |||| | | || || || || || Sbjct 430528 CTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGTCATCTCCCCAGATGCC 430587 Query 81720 GATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 || ||| |||||||| | ||||| || ||| |||| Sbjct 430588 GACAGCGACACGCATGATCATGTGTTGTGGCCGCTCG 430624 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| | || || || ||||||||||| ||||||||||| |||||||||| | || Sbjct 428884 TGCCTGAGTGCGGAGGTAGTACATGCCAGTCTTGAGGCCGAGCTTCCAGCCGGCGAAATG 428943 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTC-CATGAAGATGTTCAGAGACTGAGACT 80149 ||| ||| ||| || || || |||| |||| |||||| || ||||| |||| Sbjct 428944 CATGCTGGTGATCTT-GCCCATGGACGGCTCTCGCATGTGGATGTTGAGTGACTGGGACT 429002 Query 80150 GACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCC 80209 | |||||| || ||||| || || ||||| | | ||| | | | || | ||||||| Sbjct 429003 GGTCGATGAATGCACCACGGTCAGCAGCCATCTGCACAATAGTCCTCTGAGAGATTTCCC 429062 Query 80210 ATACTGT 80216 | || || Sbjct 429063 AAACGGT 429069 >seq1808 Length=99283 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || ||||| ||||||||||| Sbjct 20005 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCC 19946 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||||||||||||||| || || || ||||| Sbjct 19945 GATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAA 19886 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| |||||||||||||||| |||||||| | ||||| || Sbjct 19885 CAGCGCCTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACCCTCTCCGACTACAAC 19826 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| ||||| || || | ||||| || ||||| Sbjct 19825 ATTCAGAAGGAATCCACCCTTCACCTCGTTCTCCGTCTGCGTGGTGG 19779 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| ||||| || ||||||||||| | Sbjct 19777 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAGGTTGAGTCTTCT 19718 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||| | || || ||||| |||||||| || ||||| |||||| Sbjct 19717 GATACTATCGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 19658 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 19657 CAGCGCTTGATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGGACCCTCTCGGACTACAAC 19598 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || ||||| || || | || || || || || Sbjct 19597 ATTCAGAAGGAATCTACACTTCACCTGGTTCTCCGCCTCCGTGGAGG 19551 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || || ||||||||||| || |||||||||||| Sbjct 19549 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACTATTACGCTCGAGGTTGAGTCATCG 19490 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || ||||||||||||||||| || || ||||||||| Sbjct 19489 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 19430 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || ||||| ||||| ||||| || || || | || || | | ||||| || Sbjct 19429 CAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGGACTTTGTCTGACTACAAC 19370 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| ||||| || || | || | |||||||| ||||| || Sbjct 19369 ATTCAGAAGGAGTCCACGCTGCACTTGGTGCTCCGTCTTCGTGGTGGCCA 19320 >seq1562 Length=24550 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || |||||||| || || |||||||| ||||| Sbjct 19609 ATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCT 19550 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || ||||||||||| || || || |||||| Sbjct 19549 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGAC 19490 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 19489 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 19430 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || || |||| || || ||||| Sbjct 19429 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGAGGTGG 19380 >seq1287 Length=86926 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || ||||||||||| || |||||||| ||||| || | ||| Sbjct 66672 CTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCCGACACCAT 66613 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||| | || || |||||||||||||||||||| |||||||||||||| | Sbjct 66612 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGATT 66553 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| || ||||||| || ||||| | ||||| || |||| || Sbjct 66552 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 66493 Query 27594 GG 27595 || Sbjct 66492 GG 66491 >seq510 Length=270442 Score = 131 bits (144), Expect = 2e-25 Identities = 215/310 (69%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | ||||||||||||| ||| | ||||| | ||||| |||||||||||| Sbjct 15581 GATAACCTGCGGTCCATTCCATCCGTTGTAGACGGTTTGAAGCCAGGACAGCGCAAGGTC 15640 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 || ||||||||| ||||| ||| || ||| |||| |||||| | || || | || Sbjct 15641 ATCTACGCCTGCTTCAAGCGCAACTTGACGAAGGACAAGAAGGTTGTTGAGTTGGCTGGA 15700 Query 32074 TACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTC 32133 ||||| | || ||||| ||||| || || || || | ||| | ||| || || | Sbjct 15701 TACGTCTCTGAACAAACCGCCTACCATCATGGTGAAGTCTCGTTGCAGCAGACAATCATT 15760 Query 32134 AACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAG 32193 || || ||||||||||| || | || ||| | ||| | || ||||| || | Sbjct 15761 GGTCTAGCCCAGAACTTTGTTGGATCGAACAACATAAACATTCTGGAGCCCAGCGGTAAT 15820 Query 32194 TTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGT 32253 || || | || || |||||||| | ||| | || ||| | |||||||||||||| || Sbjct 15821 TTCGGTTCTCGTCTTGCCGGTGGTAGTGATTCGGCAAGCGCTCGTTACATCTTCACTCGC 15880 Query 32254 CTCGCACCTT 32263 || | |||| Sbjct 15881 CTATCCCCTT 15890 >seq1786 Length=271448 Score = 102 bits (112), Expect = 9e-17 Identities = 327/501 (65%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||| | |||||| | | || | ||| | | || ||||| Sbjct 165270 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCCACCTATGCCCAGCGA 165329 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || |||||| || || || || ||||| || ||||| ||| || ||| Sbjct 165330 CTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATTCGCTTCCATCTTC 165389 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| || ||| | || || ||||| ||||||||||| Sbjct 165390 TGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGAACTGATCTCTCGT 165449 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACC- 64898 || ||||| || ||| || || || | |||||| |||||||||| || ||| Sbjct 165450 GATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTCCCACCTCAAGAACCGACCA 165509 Query 64899 ATCA--CATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTC 64956 | || || | | | | || || | | |||||| | || || |||||||| Sbjct 165510 AGCAAGCA-GCGCGTCCA--GGACATCATCACCGAGGCTGTCGCCATCGAGAAGGAATTT 165566 Query 64957 ATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTAT 65016 | || | || || || ||| ||| |||||||| | | | ||||| ||||| Sbjct 165567 TTGACCGAGGCTCTGCCATGTGCCCTCCTCGGCATGAACTCTAACCTCATGAAGCAGTAC 165626 Query 65017 ATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTA---TTAAGCCCTACTGGAAT 65073 ||||||||||| || || ||||| || | || | ||| ||| || Sbjct 165627 ATCGAATTTGTCGCCGACCGCCTCCTGGTCGCCCTGGGCAACGACAAGGTTTAC---AAG 165683 Query 65074 TCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTT 65133 || || || || || |||| ||||||| ||| ||| | || ||||| ||||| || Sbjct 165684 TCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTC 165743 Query 65134 GAAAAGAGGGTAGGTGATTAC 65154 || ||| | || ||||| ||| Sbjct 165744 GAGAAGCGTGTCGGTGACTAC 165764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293411878960