Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1540 145 6e-30 >seq1540 Length=209369 Score = 145 bits (160), Expect = 6e-30 Identities = 263/380 (69%), Gaps = 10/380 (3%) Strand=Plus/Plus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 ||||||||| || || ||||| || ||| ||||||||| |||| || |||||| Sbjct 103476 GTGGCACGGCGGCAGCGCCATCTTCTTCAGGTCGGCGGGGTTCCACGCGCTCATGATGAT 103535 Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCA 30197 ||||| ||| | ||||| |||||| || || ||| || || ||||| || | Sbjct 103536 GCGCCGGTCGTACGGGTTCGTCCTGAGCTTGTGGATCACCTCG----GCGAGCTGGTCGA 103591 Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257 | ||| |||| |||||| |||||| ||| |||||| || ||||| || | ||||| Sbjct 103592 CGCCCTGGCCCGTGTAGTCGGCCCTCGCGTCGACGTACTCGGCCCCGAAGTGGCGCCACT 103651 Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC-TTGTCC 30316 |||||||||| || || |||||||| ||| || | ||| | ||||| | |||| Sbjct 103652 GGAACCCGTAGACGGGGCCCAGGTCGCCCGGCTCGCGGTG-GCCTAGCCCGACGCTGTCG 103710 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376 | | | || | || |||||| ||||||||||||| || |||| ||| |||||| Sbjct 103711 AGATACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCCGAGAGCGAAAGC 103770 Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436 || || || | ||||||||||||||| | | || |||||| ||||| Sbjct 103771 GACGAGGTCTCGCCCGATATGAACCACAGCAGCTCGGCGAGCACCGCCTTCTGGAAGACG 103830 Query 30437 CTCTTGGTCGTGAGGAGGGG 30456 | ||| || || ||||| || Sbjct 103831 CGCTTTGTGGTAAGGAGCGG 103850 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29852 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCT 29911 ||||||||||| ||||| | | || | || |||| ||| ||||||||| ||||| Sbjct 103180 GGCTCCCTCTCCAGCTGCACCCTGAGGGCATCGACGTGGTCCGCGTAGACGTGCGCGTCG 103239 Query 29912 CCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29970 |||| | ||| | | ||| ||||| || || ||||| || ||||||| || Sbjct 103240 CCCATGACGTGCGTGAGGCTC-CCCGGGATGAGGTCGCACACGTGCGCGATCATGTGTGT 103298 Query 29971 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 30030 || || |||||||| |||||||| || || || || || |||||||| | || | ||| Sbjct 103299 CAGCAGCGAGTAGCTCGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGCTG 103358 Query 30031 GTAGAGCTGACA 30042 ||| ||||| || Sbjct 103359 GTACAGCTGGCA 103370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406298599603236