Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1540 143 2e-29 >seq1540 Length=209369 Score = 143 bits (158), Expect = 2e-29 Identities = 279/403 (69%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| || || |||||||||| || ||||||||| || || Sbjct 103452 CGAGACGTAGAACTGCGCGAACATGTGGCACGGCGGCAGCGCCATCTTCTTCAGGTCGGC 103511 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 ||||||||||||| ||| | ||| | | ||| | |||||| | | | ||| ||| Sbjct 103512 GGGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTCGTCCTGAGCTTGTGGAT 103571 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCT-TCGCTCCCCCGATAC 6901 ||| | | || |||||||| | ||||| |||| ||||| || |||| | || ||| Sbjct 103572 CACCT-CGGCGAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCCCTCGCGTCGACG-TAC 103629 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 || ||||| ||||| | |||||||||||||||||| ||||||| ||||||| ||| || Sbjct 103630 TCGGCCCCGAAGTGGCGCCACTGGAACCCGTAGACGGGGCCCAGGTCGCCCGGCTCGCG- 103688 Query 6962 GATGGGAACCCC--CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA 7019 | | | ||| |||| ||| ||| | || || || |||| ||||||||||||| | Sbjct 103689 GTGGCCTAGCCCGACGCT-GTCGAGATACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGA 103747 Query 7020 CCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCT 7079 | ||| | ||||||| | || | ||| | ||||||||||||||| Sbjct 103748 CGCCCTGCTCCGAGAGCGAAAGCGACGAGGTCTCGCCCGATATGAACCACAGCAGCTCGG 103807 Query 7080 CGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||| ||| ||||| | | || || || || || || ||||| Sbjct 103808 CGAGCACCGCCTTCTGGAAGACGCGCTTTGTGGTAAGGAGCGG 103850 Score = 143 bits (158), Expect = 2e-29 Identities = 279/403 (69%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || || || || || || | | ||||| ||| ||| ||||||||||||||| Sbjct 103850 CCGCTCCTTACCACAAAGCGCGTCTTCCAGAAGGCGGTGCTCGCCGAGCTGCTGTGGTTC 103791 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | ||| | || | ||||||| | ||| || ||||||||||||| Sbjct 103790 ATATCGGGCGAGACCTCGTCGCTTTCGCTCTCGGAGCAGGGCGTCAAGATCTGGGACGGC 103731 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCG--GGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 |||| || || || | ||| ||| |||| ||| | | | || ||| ||||||| Sbjct 103730 AACGGCTCGCGCGAGTATCTCGAC-AGCGTCGGGCTAGGCCAC-CGCGAGCCGGGCGACC 103673 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA-A 34459 ||||||| |||||||||||||||||| | ||||| ||||| ||||| || | |||| Sbjct 103672 TGGGCCCCGTCTACGGGTTCCAGTGGCGCCACTTCGGGGCCGAGTA-CGTCGACGCGAGG 103614 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518 || ||||| |||| ||||| | |||||||| || | | |||||| ||| | | | Sbjct 103613 GCCGACTACACGGGCCAGGGCGTCGACCAGCTCGCCG-AGGTGATCCACAAGCTCAGGAC 103555 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 |||||| | ||| | | ||| | ||| ||||||||||||| || || ||| Sbjct 103554 GAACCCGTACGACCGGCGCATCATCATGAGCGCGTGGAACCCCGCCGACCTGAAGAAGAT 103495 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG 34621 |||||| || |||||||||| || || ||||||||| || Sbjct 103494 GGCGCTGCCGCCGTGCCACATGTTCGCGCAGTTCTACGTCTCG 103452 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 ||||| ||||||| || ||||| | | |||||| | || ||| |||| ||||| Sbjct 103161 GAGCTCGGGGAACTCGCGCGGCTCCCTCTCCAGCTGCACCCTGAGGGCATCGACGTGGTC 103220 Query 6559 CAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCAC 6615 | ||||| ||||| || |||| |||| || || |||||| ||| | ||| Sbjct 103221 CGCGTAGACGTGCGCGTCGCCCATGACGT--GCGTGAGGCTCCCCGGGATGAGGTCGCAC 103278 Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || || |||||||||| || ||||| | ||| || || |||||||||||||| || | Sbjct 103279 -ACGTGCGCGATCATGTGTGTCAGCAGCGAGTAGCTCGCGATGTTGAACGGCACGCCCAG 103337 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| | || || || || ||||||||| Sbjct 103338 GCCCATGTCGCAGGAGCGCTGGTACAGCTGGCAG 103371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | |||||||| | || |||||||||||||| || || Sbjct 103371 CTGCCAGCTGTACCAGCGCTCCTGCGACATGGGCCTGGGCGTGCCGTTCAACATCGCGAG 103312 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG-CTGG 34754 ||| | ||||| || |||||||||| || || ||| | ||| |||||| || Sbjct 103311 CTACTCGCTGCTGACACACATGATCGCGCACGT-GTGCGACCTCATCCCGGGGAGCCTCA 103253 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || |||| |||| || ||||| ||||| | ||||| |||| ||| || | || Sbjct 103252 CGC--ACGTCATGGGCGACGCGCACGTCTACGCGGACCACGTCGATGCCCTCAGGGTGCA 103195 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 |||| | | ||||| || ||||||| ||||| Sbjct 103194 GCTGGAGAGGGAGCCGCGCGAGTTCCCCGAGCTC 103161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448249047383760