Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1808 167 5e-36 seq1562 167 5e-36 seq1287 143 6e-29 seq1963 84.2 5e-11 >seq1808 Length=99283 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| ||||| || || || ||||| || || | ||||| | ||||| Sbjct 19794 AGAACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCC 19853 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| || ||||| ||||| ||||||||||| || | || ||||||||| Sbjct 19854 TCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCC 19913 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || || || ||| ||||||||||||||||| ||| Sbjct 19914 TGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGACTCAACCTCGAGAGTGATGGTC 19973 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| |||||||| || | |||||| Sbjct 19974 TTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 20005 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || |||||||| || || || || || ||||| || |||| || Sbjct 19553 TCCACGGAGGCGGAGAACCAGGTGAAGTGTAGATTCCTTCTGAATGTTGTAGTCCGAGAG 19612 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||||| || || || |||||||| || || ||||| | ||| || ||||||||||| | Sbjct 19613 GGTCCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGGAT 19672 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| ||||||||||| ||||| || ||||| || ||||| |||||||| Sbjct 19673 GCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATAGTATCAGAAGACTCAACCTC 19732 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| || ||||||||||| || || | |||||| Sbjct 19733 GAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19777 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || |||||||| || || ||||| || || | | || Sbjct 19328 ACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGT 19387 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || || ||||||||||||||||| ||||| || || ||||| ||||| || || | || Sbjct 19388 CCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGGATGCC 19447 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| || || ||||| || ||||||||||| Sbjct 19448 CTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGATGACTCAACCTCGAG 19507 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| | ||||| ||||| | |||||| Sbjct 19508 CGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 19549 >seq1562 Length=24550 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 19395 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 19454 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | |||||||||||| Sbjct 19455 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 19514 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 19515 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 19574 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 19575 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19606 >seq1287 Length=86926 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 66493 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66552 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || |||| ||| ||||||||||||||||| || ||||| ||| Sbjct 66553 AATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 66612 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 66613 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 66671 >seq1963 Length=539952 Score = 84.2 bits (92), Expect = 5e-11 Identities = 193/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTG--CAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150 ||| || ||||||||||||| | | ||| |||||||| |||||||| | || Sbjct 429859 GTTTTTCTGGTTGCTCTTTCGGTTCGCGTGG--TCTTTGTATAGCATGAAGGGGTTGCCA 429916 Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210 ||| | |||||| |||| ||| | ||| | || |||||| | ||||| Sbjct 429917 GTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAACTTCTGGGCCTTCATGGTCTTGCGA 429976 Query 178211 GCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCA 178270 | || || ||||||||||| | |||||| |||| || ||| || ||| || Sbjct 429977 CCGCGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAGTCG 430036 Query 178271 TCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGT 178330 | || || || |||||||||||| | ||| |||||| |||| | || || || Sbjct 430037 GCAAGTCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGC 430096 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTC 178379 |||||||| || || | | |||||| ||| ||||| || | ||||| Sbjct 430097 TTCATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTC 430145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159116608553795