Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1562 86.0 5e-12 >seq1562 Length=24550 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | ||||| || || ||| ||| || || || || || |||| Sbjct 19380 CCACCTCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19439 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || || || ||||||||||| | ||| Sbjct 19440 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19499 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| | | | || ||| |||||||| Sbjct 19500 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19559 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || ||||| || || || || ||||| ||||| Sbjct 19560 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533124787679