Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1562 138 3e-27 seq1287 120 7e-22 seq1598 98.7 2e-15 >seq1562 Length=24550 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || |||| ||||| |||| | || Sbjct 19386 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 19445 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| || || || ||| Sbjct 19446 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCT 19505 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 19506 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 19565 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | || || | ||| | ||||| Sbjct 19566 GTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19606 >seq1287 Length=86926 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| || |||||||| Sbjct 66493 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66552 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || ||||| || |||||||| |||||||| ||| || ||| Sbjct 66553 AATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 66612 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| ||||| || | ||||| ||||||||||||| || || | ||| Sbjct 66613 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 66671 >seq1598 Length=149240 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 7608 TATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCC 7667 |||||| | | ||||| || || ||||||| | | || |||||| |||||| || Sbjct 63533 TATGCCTGCATTAATAGGAGGGTTTGGAAATTTCCTTATGCCCTTAATGGTTGGTGGCCC 63474 Query 7668 TGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||||||||| || ||||||||||| || ||||||||||||||| |||||||| Sbjct 63473 TGATATGGCATTCCCAAGGCTTAATAACATAAGTTTTTGATTATTACCGCCT 63422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192494789413802