Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1540 136 3e-27 >seq1540 Length=209369 Score = 136 bits (150), Expect = 3e-27 Identities = 261/380 (69%), Gaps = 10/380 (3%) Strand=Plus/Plus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 ||||||||| || || ||||| || ||| ||||||||| |||| || |||||| Sbjct 103476 GTGGCACGGCGGCAGCGCCATCTTCTTCAGGTCGGCGGGGTTCCACGCGCTCATGATGAT 103535 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCA 27463 ||||| ||| | ||||| |||||| || || ||| || || ||||| || | Sbjct 103536 GCGCCGGTCGTACGGGTTCGTCCTGAGCTTGTGGATCACCTCG----GCGAGCTGGTCGA 103591 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | ||| |||| |||||| ||||| ||| |||||| || ||||| || | ||| | Sbjct 103592 CGCCCTGGCCCGTGTAGTCGGCCCTCGCGTCGACGTACTCGGCCCCGAAGTGGCGCCACT 103651 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC-TTGTCC 27582 |||||||||| || || |||||||| ||| || | ||| | ||||| | |||| Sbjct 103652 GGAACCCGTAGACGGGGCCCAGGTCGCCCGGCTCGCGGTG-GCCTAGCCCGACGCTGTCG 103710 Query 27583 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 27642 | | | || | || |||||| ||||||||||||| || |||| ||| |||||| Sbjct 103711 AGATACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCCGAGAGCGAAAGC 103770 Query 27643 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 27702 || || || | ||||||||||||||| | | || |||||| ||||| Sbjct 103771 GACGAGGTCTCGCCCGATATGAACCACAGCAGCTCGGCGAGCACCGCCTTCTGGAAGACG 103830 Query 27703 CTCTTGGTCGTGAGGAGGGG 27722 | ||| || || ||||| || Sbjct 103831 CGCTTTGTGGTAAGGAGCGG 103850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||||||||| ||||| | | || | || ||||| ||| ||||||||| ||||| Sbjct 103180 GGCTCCCTCTCCAGCTGCACCCTGAGGGCATCGACGTGGTCCGCGTAGACGTGCGCGTCG 103239 Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236 |||| | ||| | | ||| ||||| || || ||||| || ||||||| || Sbjct 103240 CCCATGACGTGCGTGAGGCTC-CCCGGGATGAGGTCGCACACGTGCGCGATCATGTGTGT 103298 Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296 || || |||||||| |||||||| || || || || || |||||||| | || | ||| Sbjct 103299 CAGCAGCGAGTAGCTCGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGCTG 103358 Query 27297 GTAGAGCTGACA 27308 ||| ||||| || Sbjct 103359 GTACAGCTGGCA 103370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369496468471673