Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1562 150 4e-31 seq1287 143 6e-29 seq1808 127 5e-24 seq1963 87.8 4e-12 >seq1562 Length=24550 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 19603 CAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTCCGAC 19544 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||| || |||||||| Sbjct 19543 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCAG 19484 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 19483 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 19424 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 19423 CAGAAGGAGTCCACCCTCCACCTGGT 19398 >seq1287 Length=86926 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || || || || |||||||| |||||||| ||| ||||||||| Sbjct 66671 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCCGACACCATC 66612 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || ||||| || || |||||||| ||| | Sbjct 66611 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGATTG 66552 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| || ||||| | || || |||| || ||| |||| || Sbjct 66551 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 66493 >seq1808 Length=99283 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || || || || || |||||||| || || ||| Sbjct 19546 CAGATTTTTGTGAAGACCTTGACGGGGAAGACTATTACGCTCGAGGTTGAGTCATCGGAC 19487 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 19486 ACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAA 19427 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| || || ||||| ||||| || ||||| | | || || ||| | Sbjct 19426 CGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGGACTTTGTCTGACTACAACATT 19367 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 19366 CAGAAGGAGTCCACGCTGCA-CTTG 19343 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| |||||||| || ||| || Sbjct 20002 CAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCCGAT 19943 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || ||||| || ||||| || Sbjct 19942 ACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAACAG 19883 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || ||||| ||||| | || || |||| || ||| | Sbjct 19882 CGCCTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACCCTCTCCGACTACAACATT 19823 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || || || ||| Sbjct 19822 CAGAAGGAATCCACCCTTCACCTCGTT 19796 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || || ||||||||||| || || || Sbjct 19774 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAGGTTGAGTCTTCTGAT 19715 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| ||||| || || || |||||||| |||||||| Sbjct 19714 ACTATCGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAG 19655 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| ||||| || || || |||| || | || || ||| | Sbjct 19654 CGCTTGATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGGACCCTCTCGGACTACAACATT 19595 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| ||||| || || ||| Sbjct 19594 CAGAAGGAATCTACACTTCACCTGGTT 19568 >seq1963 Length=539952 Score = 87.8 bits (96), Expect = 4e-12 Identities = 194/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 214128 GTTTTTCTGGTTGCTTTTGCGG--CAAATGGCATCTTTGTATGCGATGAAAGGCATTCCC 214185 ||||||||||||||| || ||| | ||| ||||||||| ||||| || | || Sbjct 429859 GTTTTTCTGGTTGCTCTTTCGGTTCGCGTGG--TCTTTGTATAGCATGAAGGGGTTGCCA 429916 Query 214186 ACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTG 214245 |||| ||||| | || ||| | ||| | | |||||||||| | ||| Sbjct 429917 GTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAACTTCTGGGCCTTCATGGTCTTGCGA 429976 Query 214246 GCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCA 214305 | | ||||| || |||||||| || || |||| |||||| ||| ||||||| || Sbjct 429977 CCGCGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAGTCG 430036 Query 214306 TCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTT 214365 |||| || || ||| |||||||| | || |||| | || || | | ||| | Sbjct 430037 GCAAGTCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGC 430096 Query 214366 TTCATGAAAAGGTCGGAAGTCCAGATTGCATAAAAAATCTCTCTGGCTC 214414 |||||||| || |||| |||||| |||| |||| || | ||||| Sbjct 430097 TTCATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTC 430145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203694447453302