Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1562 172 5e-38 seq1808 145 7e-30 seq1287 132 4e-26 >seq1562 Length=24550 Score = 172 bits (190), Expect = 5e-38 Identities = 179/233 (77%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | |||||| || || ||| ||||||||| ||||| |||||| Sbjct 19377 CCACCACCTCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 19436 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||| | | Sbjct 19437 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGG 19496 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || ||||||||| ||| || ||| || | || | |||||| |||| Sbjct 19497 GGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACT 19554 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 19555 CCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 19607 >seq1808 Length=99283 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| |||||||||||||| ||||||||| Sbjct 19779 CCACCACGCAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 19838 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||| |||||||| || || ||||||||||||||||| | ||| Sbjct 19839 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGGGGGG 19898 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | ||| ||| ||||| || Sbjct 19899 ATACCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGACTCAAC 19957 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || || || ||||||||||| ||||||||| Sbjct 19958 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCATG 20006 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||||||||| ||||||||||||||| ||||| || Sbjct 19322 GCCACCACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGA 19381 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || |||| || ||||||||||| ||||| || || || || ||||| | || Sbjct 19382 CAAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGG 19441 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | | ||| | | | ||||| ||||| | Sbjct 19442 GATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGATGACTCAA 19500 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| || || || ||||||| ||||| || |||||||||||| Sbjct 19501 CCTCGAGCGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCATG 19550 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || || |||||||||||||| ||||| || Sbjct 19550 GCCTCCACGGAGGCGGAGAACCAGGTGAAGTGTAGATTCCTTCTGAATGTTGTAGTCCGA 19609 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| ||| |||| || |||||||| || || || |||| |||||| ||||| | || Sbjct 19610 GAGGGTCCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 19669 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| || |||| || | | | ||| || ||||| | Sbjct 19670 GATGCCCTCCTTATCCTGGATCTTCGACTTC-ACATTGTCGATAGTATCAGAAGACTCAA 19728 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 19729 CCTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19777 >seq1287 Length=86926 Score = 132 bits (146), Expect = 4e-26 Identities = 140/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| | || || ||||||||||||||||| | Sbjct 66491 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66550 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||| | ||||| | |||||||||| ||| || ||| ||| | Sbjct 66551 TCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 66609 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||| ||||||||||| | || || || || |||||||| ||||| ||| Sbjct 66610 TCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 66669 Query 41852 AA 41853 || Sbjct 66670 AA 66671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462290229119600