Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq56 226 3e-54 seq157 150 2e-31 seq427 138 1e-27 seq230 118 1e-21 >seq56 Length=117397 Score = 226 bits (250), Expect = 3e-54 Identities = 329/462 (71%), Gaps = 2/462 (0%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 |||||| || |||||||||| ||||| || |||||| | | ||| || || Sbjct 53561 CCGTGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGATCGCGAGTCCACC 53502 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 | | | |||| ||||| |||||||| |||||||||||| ||||||| ||| ||| Sbjct 53501 TATGCCCAGCGACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCATTC 53442 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| |||| || ||||||||||| || ||||||||||| |||||||| ||| ||||||| Sbjct 53441 GCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAG 53382 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||| || | || ||||||||||| |||||| |||||| | |||||| || || Sbjct 53381 CTCATTTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTCCTGTTCTCTCACCTG 53322 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 | | || || ||| | ||| ||| ||| ||| ||||||| || |||||||||||| Sbjct 53321 AGGAACCGTCCAAGCAAGCAGCGTGTCGAGGACATCATCACCGAGGCCGTCGCCATCGAG 53262 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGAT 117327 || ||| | || || || ||||| |||| || || || | || | | | || Sbjct 53261 AAGGAGTTCTTGACTGAGGCTCTGCC-ATGCGCCCTCCTCGGCATGAACTCCAACCTCAT 53203 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA 117387 | ||| ||||||||||| || |||||| | || ||| ||| |||| | || ||| Sbjct 53202 GAAGCAGTACATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCTCTGGGCAACGAGAAGGT 53143 Query 117388 CTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| || | ||||| | ||||| ||| | |||||| Sbjct 53142 TTACAAGTCGTCGAACCCCTTCGACTTCATGGAGAACATCTC 53101 Score = 179 bits (198), Expect = 4e-40 Identities = 211/285 (74%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||| | ||||||| | || || Sbjct 53955 ATCTGGCAGATGTACAAGAAGCACGAAGCTTCCTTCTGGACTGCCGAGGAGATCGATCTC 53896 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| ||| |||| ||||||| | ||| || Sbjct 53895 TCCAAGGACCTGCACGACTGGAGCAACCGCCTGACCGACGACGAGCGATACTTCGTCTCC 53836 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| ||||| || || || |||||||||||||| ||||| ||||| Sbjct 53835 CACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTGGTGGAGCGC 53776 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | | |||||||| |||||||||||||| |||||| ||| Sbjct 53775 TTCAGCGGCGAGGTTCAGATCCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATG 53716 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | ||| ||| ||||||||||| ||| Sbjct 53715 GAGAACATCCACTCTGAGACGTACTCGCTGCTCATCGACACCTAC 53671 >seq157 Length=302622 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 142473 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 142414 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || ||||| ||| | |||||| Sbjct 142413 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 142354 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 142353 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 142294 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| |||| ||||| || || ||||| || | || || ||| Sbjct 142293 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGTGGC 142243 >seq427 Length=29395 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| |||| ||||| || || Sbjct 25014 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACGCTCGAGGTCGAGTCCTCC 25073 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 25074 GATACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 25133 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| || || || |||| ||||||||| |||||||||| Sbjct 25134 CAGCGTCTTATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCTCCGACTACAAC 25193 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| | || || ||||| || Sbjct 25194 ATTCAAAAGGAGTCTACCCTCCATCTCGT 25222 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| |||| ||||| || | Sbjct 25242 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCT 25301 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| ||||| |||||| | |||||| Sbjct 25302 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAG 25361 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 25362 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 25421 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| |||| || || || || Sbjct 25422 ATTCAGAAGGAATCCACTCTTCACCTGGT 25450 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| || ||||| | || ||||| | | Sbjct 25470 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCA 25529 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | ||| || |||| ||||| ||||| || || | ||||| Sbjct 25530 GACACGATTGACAACG-TGAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCA 25588 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| ||| |||| || | || || || |||||||| Sbjct 25589 GCAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAA 25648 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| | |||||||| || ||| | || | | ||||||| Sbjct 25649 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTCCGTGGCGGCG 25698 >seq230 Length=63387 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| || |||||| | || || || || | |||| | | Sbjct 45837 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGACACCATC 45778 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| | |||||||| ||| | Sbjct 45777 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATT 45719 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||| Sbjct 45718 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 45659 Query 40878 GG 40879 || Sbjct 45658 GG 45657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213378023040