Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq427 125 6e-24 seq56 102 7e-17 seq157 100 2e-16 seq230 89.7 4e-13 >seq427 Length=29395 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || || || || ||||||||||| ||| | ||||| ||||| Sbjct 25450 ACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 25391 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| ||||||||||| || || || || ||||||||||| Sbjct 25390 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGG 25331 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | ||||||||||| ||| | || ||| Sbjct 25330 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTCTTG 25271 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || |||||||| Sbjct 25270 CCAGTCAGAGTCTTGACGAAGATCTGCAT 25242 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| |||||||||||||| ||| | ||||| |||||||| || Sbjct 25216 TGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGTTGC 25157 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || || |||| ||||||||||| || || || ||||||||||||||| || || Sbjct 25156 TTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTG 25097 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| ||| || | | ||||||||||| || | || ||||| || Sbjct 25096 GACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTG 25037 Query 118716 AGAGTTTTTACAAAAATCTGCATGG 118740 || || || || || |||||||||| Sbjct 25036 AGGGTCTTCACGAAGATCTGCATGG 25012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | || || ||| || Sbjct 25679 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCCATCTTC 25620 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| | |||||||||||||| || || || || ||||||||||| Sbjct 25619 CAACTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTG 25560 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||||| | ||||||||| | || | ||| || Sbjct 25559 AATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCAAGCGTGATCGTCTT 25500 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || ||||||||||| Sbjct 25499 GCCCGTCAAGGTCTTGACGAAAATCTGCAT 25470 >seq56 Length=117397 Score = 102 bits (112), Expect = 7e-17 Identities = 244/366 (67%), Gaps = 15/366 (4%) Strand=Plus/Minus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 ||||| || ||||| || |||||| | ||||| | || || |||||||||||| || Sbjct 53408 ATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGTGATGAGGGTCTGCACACCGAC 53349 Query 45002 TTTGCCTGCCTC---TACTATAATACGAGAGTCGATCAAAAGTTGGACGCGCCCACCGTC 45058 || ||||| ||| | || | | ||| | || || | | ||| ||| Sbjct 53348 TTCGCCTGTCTCCTGTTCTCTCACCTGAGGAACCGTCCAAGCAAGCA-GCGT-----GTC 53295 Query 45059 AACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCC 45118 | ||||| || |||| ||||| |||||||||| ||| || || ||||||||||||| Sbjct 53294 GAGGACATCATCACCGAGGCCGTCGCCATCGAGAAGGAGTTCTTGACTGAGGCTCTGCCA 53235 Query 45119 GAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGAT 45178 | | | || |||||| | || | |||| ||||||| |||||||| ||||| Sbjct 53234 TGCGCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCCGAC 53175 Query 45179 CGTCTTCTCGTC---CAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAG 45235 ||||| || ||| | | || | ||| | ||| | | |||||| ||||| Sbjct 53174 CGTCTCCTGGTCGCTCTGGGCAACGA---GAAGGTTTACAAGTCGTCGAACCCCTTCGAC 53118 Query 45236 TTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAA 45295 || ||| | || || || | | ||||| || || || |||||||| || ||||| || Sbjct 53117 TTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGAC 53058 Query 45296 TACAAG 45301 ||| || Sbjct 53057 TACCAG 53052 >seq157 Length=302622 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| | || || |||||| Sbjct 142265 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 142324 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 142325 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 142384 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 142385 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTG 142444 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 142445 CCCGTGAGGGTCTTCACGAAGATCTGCATG 142474 >seq230 Length=63387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||||| |||||| ||||| || || ||| |||| Sbjct 45659 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 45718 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 45719 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 45778 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | | ||| ||||| | ||| | || ||||| ||||| || || || || Sbjct 45779 ATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 45837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825620273568