Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq157 104 3e-17 seq427 100 3e-16 seq230 89.7 6e-13 >seq157 Length=302622 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| |||| ||| |||||| || || ||||| || | || || || || Sbjct 142259 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCG 142318 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | || | || |||||| Sbjct 142319 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 142378 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| | | | |||||| || ||||| || | ||||| Sbjct 142379 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 142438 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| || ||||| ||||| Sbjct 142439 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 142473 >seq427 Length=29395 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| || |||||| || || ||||| |||| || ||||| | Sbjct 25685 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCC 25626 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| |||||||| ||||| ||||||||||| | || | | |||||| Sbjct 25625 ATCTTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTT 25566 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | | ||| | | | |||||| || || || || | ||||| Sbjct 25565 GTCC-TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCAAGCGTGA 25507 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| | ||||| || || || ||||| Sbjct 25506 TCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 25470 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || | || || || |||| || || ||||| || || || Sbjct 25205 CTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAA 25146 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 25145 GATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 25086 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || ||| || || || |||| ||||||||| ||||| || || ||||| || Sbjct 25085 GTCGATGGTATCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTTCAC 25026 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 25025 GAAGATCTGCAT 25014 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || | || || || |||| || |||||||| |||||||| Sbjct 25432 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAG 25373 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 25372 ATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG 25313 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || || || || |||| || ||||| ||||| || || ||||| || Sbjct 25312 TCGATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACG 25253 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 25252 AAGATCTGCAT 25242 >seq230 Length=63387 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||| || || | || || |||||||| || ||||| | Sbjct 45657 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 45716 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || |||||||||| ||| || |||| ||| | Sbjct 45717 TCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 45775 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || ||||| || | ||||| || |||||||| || ||||| || Sbjct 45776 TCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 45835 Query 43173 AAG 43175 ||| Sbjct 45836 AAG 45838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811138461120