Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq48 224 9e-54 seq56 152 5e-32 seq427 107 2e-18 seq157 102 7e-17 >seq48 Length=122101 Score = 224 bits (248), Expect = 9e-54 Identities = 570/862 (66%), Gaps = 4/862 (0%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || ||||| | ||||| ||||| ||||| ||| || | |||||| | || || Sbjct 16378 GCAATGGAGGCCAAGTTGCACACGGCGACCTCATCTGGGGCAGAGTACTCAATGATCTCA 16437 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||| | || || |||| || |||||||||| || || ||| Sbjct 16438 GTGCAAAGGTTGGAGCTTCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTCCGGTTGGCG 16497 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 |||||||| |||||| | || |||| ||||| ||| | ||||| || || | Sbjct 16498 TGGTCCTTGTACAGCATGAAGGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATGGCATAC 16557 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTA 23259 |||| |||| || | | ||| || | | || || | |||||||| | ||| Sbjct 16558 CACAGCTTCTGGGCCTTCATG-GTCTTGCGACCACGACCCTCCTTCTCGTACTGCTCGTA 16616 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || ||||| || ||||||| |||||||| ||||| || | | | || ||||| Sbjct 16617 GAGAGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGACACTCGTTAGGGCACAT 16676 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 || |||| || || || || || |||| |||||||| || ||||| || || Sbjct 16677 CAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAAAAGATCGGGGATCCAGAGGGC 16736 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 ||| || || ||||| || | |||||| || ||| |||||| || || | || Sbjct 16737 AAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCGTGGTTCTTGCGCAGGTCAAGGAA 16796 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | || || || || || | ||| || Sbjct 16797 CTCGAATACATCGGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGCTTGTT 16856 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| ||||| |||||||| ||||| ||||||||| | || | ||||| || | || Sbjct 16857 GCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAGACCCGCAGCATTGGGGTAATGCC 16916 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 || || | ||| ||| || | || || | || || | | ||| |||| Sbjct 16917 ATTAGAGGTACCGTTAGTGCCAGCGATGTATGAGCCGGTGGCACGGATGCGGTGCACGTT 16976 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT-TGTTTCAGAGTGTCGTAGA 23678 | ||| || || || || || || ||||| || || | ||| || ||||| |||| Sbjct 16977 CAGACCAATTCCACCCGCCATCTTAGAGATCATAGCACAAGTCTTTAAG-GTGTCATAGA 17035 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 ||||||| ||||||||||| || | |||| | ||| || || |||| || | | | Sbjct 17036 TGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCATGATGACAGCTGGGGCTGAG 17095 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | || | || ||||| ||| ||| ||| || || ||| | || ||||| || | Sbjct 17096 GAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTGTGAAGAACTTGTTTGACATCAGGT 17155 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||| || || ||| | || | || ||||| ||||||| ||||| ||||| | Sbjct 17156 TGTAGGTCTCAATGACCCTCTCGACATCGTCTCCCCAGATACCGACAGCGACACGCATGA 17215 Query 23859 TCATGTATTGAGGTCTCTCGAC 23880 |||||| || || | |||||| Sbjct 17216 TCATGTGCTGTGGCCGCTCGAC 17237 >seq56 Length=117397 Score = 152 bits (168), Expect = 5e-32 Identities = 330/487 (68%), Gaps = 14/487 (3%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGA 57972 ||||||||| || ||| | |||| ||||| | | ||| | | |||| | ||| || Sbjct 53550 CAAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGATCGCGA-GTCCACCTATGCCCAGC 53492 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | || | || ||||| |||||||| || || ||||| ||| || || | || | Sbjct 53491 GACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCATTCGCCTCCATTT 53432 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| | ||||| || ||||| ||||| |||||||| || ||||||| | || || | Sbjct 53431 TCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTC 53372 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | || |||||||| || || || || || || || ||| ||||||| | | ||| Sbjct 53371 GTGATGAGGGTCTGCACACCGACTTCGCCTGTCTCCTGTTCTCTCACCTG----AGGAAC 53316 Query 58153 CGAC---GCGGG-ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 || | || | | || || |||||| ||||||||||| ||||| ||||| || ||| Sbjct 53315 CGTCCAAGCAAGCAGCGTGTCGAGGACATCATCACCGAGGCCGTCGCCATCGAGAAGGAG 53256 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | || || || || || ||| | ||||| |||||| | | ||| || Sbjct 53255 TTCTTGACTGAGGCTCTGCCATGCGCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAG 53196 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326 ||||| ||||||||||||||| | || || ||| || | |||| || ||||| Sbjct 53195 TACATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCTCTGGGCAACGAGAAGGT--TTACA 53138 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | || || || || || || ||| | ||||| |||| |||||||| ||||| | Sbjct 53137 AGTCGTCGAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCT 53078 Query 58387 TCGAAAA 58393 | || || Sbjct 53077 TTGAGAA 53071 >seq427 Length=29395 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || || ||| |||| || || | || Sbjct 25242 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCT 25301 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| || | || || |||||| Sbjct 25302 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAG 25361 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || ||| || | ||| || ||| Sbjct 25362 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 25421 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| |||||||| ||||| || Sbjct 25422 ATTCAGAAGGAATCCACTCTTCACCTGGTCCT 25453 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| ||||| |||||||| | || || || | || Sbjct 25470 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCA 25529 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| || | || || |||||| Sbjct 25530 GACACGATTGACAACGTGAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCAG 25589 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||||||||||| ||| | || || ||| Sbjct 25590 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAAC 25649 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || ||||| || Sbjct 25650 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 25681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || |||||||| || ||||| |||| || || | || Sbjct 25013 CATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACGCTCGAGGTCGAGTCCTC 25072 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || |||||||| ||| | || || ||||| Sbjct 25073 CGATACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 25132 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| || | || ||| || | ||| || || Sbjct 25133 GCAGCGTCTTATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCTCCGACTACAA 25192 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || || || ||||| || || | || | ||||||| Sbjct 25193 CATTCAAAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGCGGTA 25242 >seq157 Length=302622 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 142474 CATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTC 142415 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||||||| | || || ||||| Sbjct 142414 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 142355 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| | || ||| || | ||| || || Sbjct 142354 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 142295 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || || ||||| || | ||| | || ||| Sbjct 142294 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGT 142246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761362839680