Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq48 158 2e-33 seq56 140 4e-28 >seq48 Length=122101 Score = 158 bits (174), Expect = 2e-33 Identities = 390/590 (66%), Gaps = 4/590 (1%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 |||||| || | || ||||||| | ||| || |||| | || || || ||||| || Sbjct 16656 AGGACACTCGTTAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAA 16715 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||||| || ||||| || || | || ||||| | | || ||||| || || Sbjct 16716 AAGATCGGGGATCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCGTG 16775 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || |||||| | | | ||| | ||||| || || | ||| || || Sbjct 16776 GTTCTTGCGCAGGTCAAGGAACTCGAATACATCGGCGTGCCATGGCTCAAGGTAGATAGC 16835 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | || || || ||||| || ||||| || | ||||| |||||||| || | || Sbjct 16836 GAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAGAC 16895 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | || |||||| |||| || || || |||| || || || | ||| || || | Sbjct 16896 CCGCAGCATTGGGGTAATGCCATTAGAGGTACCGTTAGTGCCAGCGATGTATGAGCCGGT 16955 Query 63521 GGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | | || | |||| ||||| || ||||| |||||||| | || Sbjct 16956 GGCACGGATGCGGTGCACGTTCA--GACCAATTCCACCCGCCATCTTAGAGATCATAGCA 17013 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || ||||| |||||||||||||| || ||||| || || |||||| | || || Sbjct 17014 CAAGTCTTTAAGGTGTCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGAAG 17073 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || |||| ||| | ||| ||| || ||||| || || || || || || || || Sbjct 17074 CATGATGACAGCTGGGGCTGAGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTGTG 17133 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || | || | || | || ||||| |||||||| | || | ||| | Sbjct 17134 AAGAACTTGTTTGACATCAGGTTGTAGGTCTCAATGACCCTCTCGACATCGTCTCCCCAG 17193 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 || || || ||||||||||| | ||||||||| || | || |||| ||| Sbjct 17194 ATACCGACAGCGACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTT 17243 Score = 104 bits (114), Expect = 3e-17 Identities = 353/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | ||||| || ||||| |||| || | | || || || |||||||| Sbjct 15460 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATG 15519 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACT 62152 || || || |||||||| |||| ||| || ||||| || || | ||| || | Sbjct 15520 CCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGAT 15579 Query 62153 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62212 || || || ||||| || | ||| ||| ||||| |||||||| || | ||| || Sbjct 15580 -GGCTCCCTCATGTGGATGTTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGC 15638 Query 62213 AGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62272 |||||| | | || ||| | || | || ||||| | || || || | ||| || Sbjct 15639 AGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 15698 Query 62273 ATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTT 62329 ||| | || | | | | | ||||||||||| ||| | || | || || | ||||| Sbjct 15699 ATCAGCCGGGATGCTAGGAATGTTCTGAATGGAACCATCCTCGGCGATGATACGGTTCTT 15758 Query 62330 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTAC 62389 || | ||| ||| || ||| || | | | || ||||| ||||| || || Sbjct 15759 CATGGCCTCAGACCACAAGCCGAGCTCTGTCAGATCCCTGAGGAGCCAAGGGTTGACGAC 15818 Query 62390 TTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449 ||||| || |||| | || | || ||| || || ||| || || || | | Sbjct 15819 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCAAAGCA 15878 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62509 |||||| || |||| || || | || || ||||| ||||| ||||||| ||| | || Sbjct 15879 CTCATTGTTGCCCAGGATCTGCGACGTCGACGCAGTGGGCATTGGTGCCAGCAACAGGCT 15938 Query 62510 ATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 || | || ||| || | | |||| || || || || ||||| | ||| || || | Sbjct 15939 GTTGCGAACACCAGTCTCCT-TGATCTTCTCCTTGAGCGCATCCCAGTCCCAGAGGTCGG 15997 Query 62569 ACGG 62572 | || Sbjct 15998 AGGG 16001 >seq56 Length=117397 Score = 140 bits (154), Expect = 4e-28 Identities = 162/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||| ||||| ||| |||||||||||| || | | ||| | ||||| || Sbjct 53332 AACAGGAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAG 53391 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| ||||||||||| || ||||| || ||||| ||||||| ||| Sbjct 53392 AAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAATGCGCCG 53451 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749 |||||||| || || || ||||| ||||||| |||| || |||| || || Sbjct 53452 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCATAGGTGGACTCG 53511 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | || || |||||||| ||||||| ||||||||||| Sbjct 53512 CGATCCTGGATCCACTTGAGAGCCCAGTCGGCCTTCTT 53549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810483061120