Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq48 165 1e-35 seq56 125 1e-23 >seq48 Length=122101 Score = 165 bits (182), Expect = 1e-35 Identities = 348/517 (67%), Gaps = 4/517 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 |||||||| || || || ||||||| | ||| || || | | | || || ||||| Sbjct 16654 CCAGGACACTCGTTAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATG 16713 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || ||||| || ||||| || || | || ||||| | || || |||||| || || Sbjct 16714 AAAAGATCGGGGATCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCG 16773 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | ||| | ||||| || || | ||| || Sbjct 16774 TGGTTCTTGCGCAGGTCAAGGAACTCGAATACATCGGCGTGCCATGGCTCAAGGTAGATA 16833 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||||| |||||||| || | Sbjct 16834 GCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAG 16893 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || |||||| |||| ||||| || | ||| || || || | ||| || || Sbjct 16894 ACCCGCAGCATTGGGGTAATGCCATTAGAGGTACCGTTAGTGCCAGCGATGTATGAGCCG 16953 Query 72274 CTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| || ||| || | |||| ||||| || ||||| |||||||| | | Sbjct 16954 GTGGCACGGATGCGGTGCACGTTCA--GACCAATTCCACCCGCCATCTTAGAGATCATAG 17011 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || ||||| || |||||||||||||| || || || ||| |||||| | || | Sbjct 17012 CACAAGTCTTTAAGGTGTCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGA 17071 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || |||| ||| | || ||| || ||||| || || || || || || || | Sbjct 17072 AGCATGATGACAGCTGGGGCTGAGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTG 17131 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 | || | || | |||| || ||||| |||||||| Sbjct 17132 TGAAGAACTTGTTTGACATCAGGTTGTAGGTCTCAAT 17168 Score = 114 bits (126), Expect = 2e-20 Identities = 323/493 (66%), Gaps = 5/493 (1%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||| ||||| | || || || | || || || ||||||||| Sbjct 15460 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATG 15519 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || |||||||| |||| ||| || ||||| || || | ||| || | | Sbjct 15520 CCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGAT 15579 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || ||||| || || | |||||| ||||| |||||||| || | ||| || Sbjct 15580 -GGCTCCCTCATGTGGATGTTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGC 15638 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 |||||| | | || ||| | || | || ||||| | || || || | ||| || Sbjct 15639 AGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 15698 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 ||| | || | | | | | ||||||||||| ||| | || || || || | || || Sbjct 15699 ATCAGCCGGGATGCTAGGAATGTTCTGAATGGAACCATCCTCGGCGATGATACGGTTCTT 15758 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 || | ||| ||| || ||| || | | | || ||||| ||| || || || Sbjct 15759 CATGGCCTCAGACCACAAGCCGAGCTCTGTCAGATCCCTGAGGAGCCAAGGGTTGACGAC 15818 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 || || || |||| | || | || ||| || || ||| || || || | | Sbjct 15819 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCAAAGCA 15878 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 |||||| || |||| || || | || || ||||| ||||| ||||||| ||| || || Sbjct 15879 CTCATTGTTGCCCAGGATCTGCGACGTCGACGCAGTGGGCATTGGTGCCAGCAACAGGCT 15938 Query 71265 ATTTCTAAGACCA 71277 || | || |||| Sbjct 15939 GTTGCGAACACCA 15951 >seq56 Length=117397 Score = 125 bits (138), Expect = 1e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| ||||| ||| ||||||||||||||| | | ||| | |||||||| Sbjct 53332 AACAGGAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAG 53391 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| ||||||||||| || ||||| || || || || |||| || Sbjct 53392 AAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAATGCGCCG 53451 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 |||||||| || || || || || ||||||| |||| || |||| || | Sbjct 53452 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCATAGGTGGACTCG 53511 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | || || |||||||| ||||||| ||||||||||| Sbjct 53512 CGATCCTGGATCCACTTGAGAGCCCAGTCGGCCTTCTT 53549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131616127040