Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq607 140 2e-28 seq296 131 1e-25 >seq607 Length=11868 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1674 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1733 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1734 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1768 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11519 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 11578 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 11579 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 11613 >seq296 Length=50085 Score = 131 bits (144), Expect = 1e-25 Identities = 204/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||| | ||||| |||||||| ||| |||| | | ||||||||||| ||||| ||| Sbjct 13689 GACCCCTTCTATCGCTACAAGATGGAGCGCCTTCAGACAAAGGTCGAGGGCAAGGGCAAC 13748 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || |||||||| |||||| || || ||| || | |||| ||||| | | Sbjct 13749 GGTATCAAGACCGTCATCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGCCCCGGC 13808 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 ||||| || || || || || | ||| |||||||| ||||| | | || | || Sbjct 13809 TCCTACTTGATCAAGTACTTTGGCTTCGAGCTTGGCGCCCAGACCAACATCGACCCTAAG 13868 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 | || || | ||| | ||||| | ||| | ||| ||||||| |||||| | ||||| Sbjct 13869 GATGATCGTTGGATCATCAACGGTGCCCATGAGTCTCCCAAGCTCCAGGACCTCCTTGAT 13928 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 ||||| || | ||| || ||||| | | ||| | ||||| ||||||| Sbjct 13929 GGCTTCATCAAGAGGTTCGTCCTGTGCCACAAGTGCAAGAACCCCGAGACCG 13980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943509719224