Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq56 116 8e-21 seq656 104 5e-17 seq48 96.9 7e-15 >seq56 Length=117397 Score = 116 bits (128), Expect = 8e-21 Identities = 248/367 (68%), Gaps = 10/367 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | |||||||| ||||||||||||||||||||| | Sbjct 53074 TCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCGAC 53133 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| || || || | || ||||| || |||||||| | Sbjct 53134 GACTTGTAAACCTTCTCGTTGCCCAGAGCGACCAGGAGACGGTCGGCAACAAACTCGATG 53193 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | | || || | |||||| | | Sbjct 53194 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGGGCGCATGGCAGAGCCTCAGTCAAG 53253 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTG--TGCCAGAG 251797 || ||||| ||| |||| || ||||| | || ||| || ||| ||| | | Sbjct 53254 AACTCCTTCTCGATGGCGACGGCCTCGGTGATGATGTCCTCGACACGCTGCTTGCTTG-G 53312 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 || |||| ||| | ||| ||||||| | | || | |||||||||||| | Sbjct 53313 AC----GGTTCCTCAGGTGAGAGAACAGGAGACAGGCGAAGTCGGTGTGCAGACCCTCAT 53368 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| |||| ||||||||| | |||||||||||| | ||||| ||| |||||| Sbjct 53369 CACGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCC 53428 Query 251918 AGAAGAT 251924 |||| || Sbjct 53429 AGAAAAT 53435 >seq656 Length=190426 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || || || || ||||| ||||||||||| || |||| ||||| ||||| ||| ||| Sbjct 17983 GACCTTTGCGAGTGTGAGTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAACAACACC 18042 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 ||| || | ||||||||||| || || ||||| ||| ||||| || || || ||| Sbjct 18043 CGCATCCGCCTCAAGCGTGGCCGTCGTTACGGTCTTTGCGGCCCCAACGGTGCCGGAAAG 18102 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGA 279529 ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| || Sbjct 18103 TCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCAGAGCGA 18161 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 ||| | ||| |||| || ||||||||| | ||| Sbjct 18162 GGTCAAGACTGTGTTCGTTGAGCACGACCTTGAC 18195 >seq48 Length=122101 Score = 96.9 bits (106), Expect = 7e-15 Identities = 183/266 (69%), Gaps = 5/266 (2%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | ||||||||||| |||||||| | | | | ||| || ||| Sbjct 15606 CTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAATGGTCCTCTGAGA 15665 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| |||||||| | ||||||| ||||| | |||| | || ||||| Sbjct 15666 GATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCAGCCGGGATGCTAGGAATGTTCTG 15725 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 || || || | | ||| || || |||||||||| | ||| ||||| | ||||| Sbjct 15726 AATGGAACCATCCTCGGCGATGATACGGTTCTTCATGGCCTCAGACCACAAGC--CGAGC 15783 Query 293295 AATG--AGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 || || || | || || ||| |||||| || ||||||| |||||||| || Sbjct 15784 TCTGTCAGATCCCTGAGGAGCCAAGGGTTGACGACCTGGAACTCGCCAGCGAGCACACGT 15843 Query 293353 CGGCTGTAAATGTTCGAAGTG-ATGG 293377 || ||| ||||| || ||| |||| Sbjct 15844 CGCTGGTAGATGTTGGAGGTGTATGG 15869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824895080264