Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq427 105 7e-18 seq157 104 3e-17 seq230 89.7 6e-13 >seq427 Length=29395 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| || |||||| || || ||||| |||| || ||||| | Sbjct 25685 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCC 25626 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||| |||||||| ||||| ||||||||||| | ||| | | |||||| Sbjct 25625 ATCTTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTT 25566 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | | ||| | | | |||||| || || || || | ||||| Sbjct 25565 GTCC-TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCAAGCGTGA 25507 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | ||||| || || || ||||| Sbjct 25506 TCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 25470 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| || | || || || |||| || || ||||| || || || Sbjct 25205 CTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAA 25146 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 25145 GATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 25086 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| || || || |||| ||||||||| ||||| || || ||||| || Sbjct 25085 GTCGATGGTATCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTTCAC 25026 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 25025 GAAGATCTGCAT 25014 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || | || || || |||| || |||||||| |||||||| Sbjct 25432 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAG 25373 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 25372 ATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG 25313 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || || || || || |||| || ||||| ||||| || || ||||| || Sbjct 25312 TCGATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACG 25253 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 25252 AAGATCTGCAT 25242 >seq157 Length=302622 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| ||| |||||| || || ||||| || | || || || || Sbjct 142259 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCG 142318 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||| | || | || |||||| Sbjct 142319 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 142378 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | |||||| || ||||| || | ||||| Sbjct 142379 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 142438 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| || ||||| ||||| Sbjct 142439 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 142473 >seq230 Length=63387 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||| || || | || || |||||||| || ||||| | Sbjct 45657 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 45716 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | || | || |||||||||| ||| || |||| ||| | Sbjct 45717 TCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 45775 Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || ||||| || | ||||| || |||||||| || ||||| || Sbjct 45776 TCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 45835 Query 42198 AAG 42200 ||| Sbjct 45836 AAG 45838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206661695360