Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq56 118 1e-21 seq427 113 4e-20 seq230 102 8e-17 >seq56 Length=117397 Score = 118 bits (130), Expect = 1e-21 Identities = 248/365 (68%), Gaps = 21/365 (6%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| ||||| || || ||||||||| || || | || || || ||||||||| || Sbjct 53408 ATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGTGATGAGGGTCTGCACACCGAC 53349 Query 47283 TTTGCCTGTCTCTACTACAA-CACTAGAGT---CGATCAA--AAGTTGGACGTGCCCACC 47336 || ||||||||| | | ||| ||| || ||| ||| | |||| | | Sbjct 53348 TTCGCCTGTCTCCTGTTCTCTCACCTGAGGAACCGTCCAAGCAAGCAG--CGTGTCGAG- 53292 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 ||||| | |||| ||||||||||| |||| |||||| || | ||||||||| Sbjct 53291 ------GACATCATCACCGAGGCCGTCGCCATCGAGAAGGAGTTCTTGACTGAGGCTCTG 53238 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 || | | | || |||||| | | | |||| |||||||||| ||||| ||| Sbjct 53237 CCATGCGCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCC 53178 Query 47457 GACCG---CCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTC 47513 ||||| |||| ||| || | || | ||| ||||| | | ||| || ||| Sbjct 53177 GACCGTCTCCTGGTCGCTCTGGGCAACGAG---AAGGTTTACAAGTCGTCGAACCCCTTC 53121 Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGC 47573 || || ||| | ||||| || |||| |||||||||||||| || |||||||| ||||| Sbjct 53120 GACTTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGT 53061 Query 47574 GAATA 47578 || || Sbjct 53060 GACTA 53056 >seq427 Length=29395 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||| ||| | ||||| || || ||||| |||||| Sbjct 25438 GTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 25379 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || || |||||||||||| ||| || |||| Sbjct 25378 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 25319 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | |||||| |||| ||| | || ||||| |||||||| Sbjct 25318 ACATTGTCGATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTC 25259 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 25258 TTGACGAAGATCTGCAT 25242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||| ||||| ||| | ||||| || || || || || || Sbjct 25210 GTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCG 25151 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || |||||||||||||| ||| || |||| Sbjct 25150 GCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTG 25091 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | |||||| |||| || | || ||||| || || || Sbjct 25090 ACATTGTCGATGGTATCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTC 25031 Query 127097 TTTACAAAAATCTGCATGG 127115 || || || |||||||||| Sbjct 25030 TTCACGAAGATCTGCATGG 25012 >seq230 Length=63387 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| ||||| Sbjct 45659 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 45718 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 ||||||||||| || || || ||||||||||||||| ||| || ||||| |||| || Sbjct 45719 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 45777 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | ||| || || | ||| | || ||||| ||||| || || || || Sbjct 45778 GATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 45837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495426840960