Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq56 172 5e-38 seq157 131 2e-25 seq427 127 2e-24 seq230 105 7e-18 >seq56 Length=117397 Score = 172 bits (190), Expect = 5e-38 Identities = 334/483 (69%), Gaps = 14/483 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | || ||| | ||| || || |||||||| Sbjct 53071 TTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTC 53130 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||| ||| |||| || || | |||||| || ||| Sbjct 53131 GACGACTTGTAAACCTTCTCGTTGCC---CAGAGCGACCAGGAGACGGTCGGCAACAAAC 53187 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 |||||||| ||| |||| | | | || | || || || |||| ||||| || || Sbjct 53188 TCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGGGCGCAT-GGCAGAGCCTC 53246 Query 132801 GGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 || | ||| | || |||||||||||| || ||||||| ||| ||| || ||| | Sbjct 53247 AGTCAAGAACTCCTT-CTCGATGGCGACGGCCTCGGTGATGATGTCCTCGACACGCTGCT 53305 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| || || | | || || ||||| | || || |||||| |||| |||| Sbjct 53306 TGCTTGGACGGTTCCTCAGGTGAGAGAACAGGAGACAGGCGAAGTCGGTGTGCAGACCCT 53365 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || | |||||||| |||||| ||| |||| ||| ||||||||||| || || |||| Sbjct 53366 CATCACGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGA 53425 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| |||||| ||| ||||||| |||||||||||| ||||| || | Sbjct 53426 GCCAGAAAATGGAGGCGAATGCGCCGCTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAA 53485 Query 133040 CCAGGCGCTCGCCGAACGTGG-CT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 |||| |||| | | | |||| || | | ||| |||||| || ||||| ||||| Sbjct 53486 CCAGTCGCTGGGCATAGGTGGACTCGCGATCCTG--GATCCACTTGAGAGCCCAGTCGGC 53543 Query 133098 CTT 133100 ||| Sbjct 53544 CTT 53546 Score = 154 bits (170), Expect = 1e-32 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| ||| | || ||||| | ||||||||| ||| || || Sbjct 53671 GTAGGTGTCGATGAGCAGCGAGTACGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 53730 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| |||||||| | ||| || || ||| ||||| ||||| || Sbjct 53731 GCCGTAGAAGCAGCGCGCCTCTGGGATCTGAACCTCGCCGCTGAAGCGCTCCACCAGGTT 53790 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| || || || ||||| ||||| || | ||| || ||| | || Sbjct 53791 CTCGTTGACGATTCCATCTGAAGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGTATCG 53850 Query 133347 CTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| ||| | ||||||| || ||||||||| || || | |||||| Sbjct 53851 CTCGTCGTCGGTCAGGCGGTTGCTCCAGTCGTGCAGGTCCTTGGAGAGATCGATCTCCTC 53910 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||| || |||||||| Sbjct 53911 GGCAGTCCAGAAGGAAGCTTCGTGCTTCTTGTACAT 53946 >seq157 Length=302622 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 142473 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 142414 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| || || |||||| | ||||| Sbjct 142413 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 142354 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 142353 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 142294 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| ||||| Sbjct 142293 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 142259 >seq427 Length=29395 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || ||||| | || |||||| | | Sbjct 25470 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCA 25529 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | ||||| ||||||||||| | ||||| Sbjct 25530 GACACGATTGACAACG-TGAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCA 25588 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| ||||| ||| |||| || | || || || |||||||| Sbjct 25589 GCAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAA 25648 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||| ||| | | |||||| Sbjct 25649 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTCCGTGGCGGC 25697 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| |||| |||||| || || Sbjct 25014 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACGCTCGAGGTCGAGTCCTCC 25073 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 25074 GATACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 25133 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| || || || |||| ||||||||| |||||||||| Sbjct 25134 CAGCGTCTTATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCTCCGACTACAAC 25193 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||||||| | || || ||| | || || ||| | | ||||| Sbjct 25194 ATTCAAAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGCGG 25240 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||| ||| |||| |||||| || | Sbjct 25242 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCT 25301 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 25302 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAG 25361 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 25362 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 25421 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| | || || || |||| || || Sbjct 25422 ATTCAGAAGGAATCCACTCTTCACCTGGTCCTCCG 25456 >seq230 Length=63387 Score = 105 bits (116), Expect = 7e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| || |||||| | || || ||| || | |||| | | Sbjct 45837 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGACACCATC 45778 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 45777 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATT 45719 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | |||||||| ||||||||||||||| || Sbjct 45718 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 45659 Query 38432 GG 38433 || Sbjct 45658 GG 45657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167148047360