Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq31 125 2e-23 seq56 102 2e-16 seq180 91.5 4e-13 >seq31 Length=128686 Score = 125 bits (138), Expect = 2e-23 Identities = 197/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| || || ||||| || ||||||||| || || || ||||| ||||| || | Sbjct 72701 CTTGACTAGTCGGCGCTGGATGTAACCAGTTTCAGCGGTCTTGACAGCGGTATCGATCAA 72760 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||||||| |||| || |||||||| | ||| ||| || || | | | Sbjct 72761 ACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCAGTGGGTGTCAGACCACGCAGGTA 72820 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 || |||| ||||| ||||| ||||||||||| | ||| ||| |||||||| ||||| Sbjct 72821 AGAATTCTCGACGAAGCCACGGGCCTCGGGCGAGTAGTCATCCTTCGTAAAGTGAGGCAG 72880 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || || | ||| |||| || | |||||| |||||| |||||| || | Sbjct 72881 TGTTCGGTACTTGAATCCGAATGGAATCCTCTTTCCCTCAACGACCTGCTGGCCGACTAG 72940 Query 302823 CGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 | | ||||||| || || || | | ||||||||||| Sbjct 72941 AGCAGTCATCTGAGAGATGTTGATGGAAGAACCCTTGGAGCC 72982 >seq56 Length=117397 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGA-CAAGCGTGCGAGTTTTGCTACTCG 133509 ||||| | ||||||||| | || ||||||||||| | | || | | | ||| || Sbjct 53549 AAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGATCGCGAGT-CCACCTATGCCCAGCG 53491 Query 133510 TCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTT 133569 || ||||| || |||| || |||||||| || ||||| || || ||| ||| ||||| Sbjct 53490 ACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCATTCGCCTCCATTTT 53431 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || |||||||| | | ||||| ||| || || ||||| || ||||| | Sbjct 53430 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCG 53371 Query 133630 GGACGAGGCACTTCACACCGAATTTGCC 133657 || |||| || |||||||| || ||| Sbjct 53370 TGATGAGGGTCTGCACACCGACTTCGCC 53343 >seq180 Length=76094 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || ||||| |||||||| ||||| ||| | | Sbjct 18857 TGAGCAATTGTCATACGAGATGGAATGGCGTGGGGGTTGATGATAATGTCAGGTGTAACA 18916 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TGTTTCCAATAGTTCCCTTT 251955 || || | |||| ||||| || ||||| | ||| || |||||||| |||||| Sbjct 18917 CCTTCGCGACTGAATGGCATGTC---TTCCTGGCGGTAAGTGACACCAATAGTGCCCTTT 18973 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || |||||||||||| ||||| |||||||| Sbjct 18974 TGACCGTGACGAGAAGCAAACTTGTCACCAAT 19005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800552672648