Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq25 168 1e-35 seq56 161 1e-33 seq48 107 3e-17 >seq25 Length=132865 Score = 168 bits (186), Expect = 1e-35 Identities = 324/478 (68%), Gaps = 0/478 (0%) Strand=Plus/Minus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 ||| |||| || || ||| | | |||||||| ||||| || ||| || | ||||||| Sbjct 78097 TGGCCGTCTGTCAGCCGCGCGTACCGCAGGATCGCACACCGCGACTGTAGTGGCTCGATG 78038 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | ||| |||||| || | |||||| |||||||| |||| | | ||||| Sbjct 78037 ATCTTGTTGGACTGGTTGCACGCGAAGGCAAATCGCGTCGTGTTGGAGTAGATCTCCATC 77978 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031 ||| || || ||||| || || ||| || | || |||||||||||| ||||| | | Sbjct 77977 GTCCGCCTCAGCGCCTGCTGCGCGCCCGAGGTCATGCTGTCGGCCTCGTCCAGGATAACG 77918 Query 333032 ATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTG 333091 ||||||||||| ||| |||||| ||| | ||| ||| | ||||| ||| Sbjct 77917 ATCTTGTGGCGGCCGGCCGGCAGCGTGACCTTCTTCTGCGCGAAGCCCTTGATCCGGTTG 77858 Query 333092 CGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCG 333151 ||||| ||||| | || ||||| || || |||||||| || ||||| ||||| | | | Sbjct 77857 CGCACCACGTCGATTCCTCGCTCATCTGAGGCGTTGAGCTCCAGCACCGCCTCCTTGTAG 77798 Query 333152 GCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGC 333211 | | |||| || ||| |||||||| | ||| || ||||| || | || ||| Sbjct 77797 GAGTCGCCCAGCAGCTGGCGTGCCAGGCAGAGCACGCTGGTCGTCTTTCCGATTCCCGGC 77738 Query 333212 GGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCA 333271 || | | || || ||||||||||| || ||| | ||||||| | Sbjct 77737 ATGCCGCTGATGATGACGTGCGGCATGTTGCCATCCTTGGCTATGATCTTGAGGCGCTCG 77678 Query 333272 ACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCC 333329 | || | |||| ||||| ||||||||||| | || || ||||| || |||| || Sbjct 77677 ATGGTCTCTACGTTTCCGACGATGTCGTCGAGGAAGATGGGACGGTATTTCTCGACCC 77620 >seq56 Length=117397 Score = 161 bits (178), Expect = 1e-33 Identities = 218/299 (73%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||| ||| || ||||| ||||| ||||||||| |||| | Sbjct 53956 GATCTGGCAGATGTAC-AAGAAGCACGAAGCTTCCTTCTGGACTGCCGAGGAGATCGATC 53898 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | | ||||| ||| ||| |||||||||||| | ||| || Sbjct 53897 TCTCCAAGGACCTGCACGACTGGAGCAACCGCCTGACCGACGACGAGCGATACTTCGTCT 53838 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||||||||| || ||| || ||||| ||||| ||||||||||| | Sbjct 53837 CCCACATCCTCGCCTTCTT-CGCTGCTTCAGATGGAATCGTCAACGAGAACCTGGTGGAG 53779 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| || | |||||||| || | || ||||| ||||||||| Sbjct 53778 CGCTTCAGCGGCGAGGTTCAGATCCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATCATG 53719 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || |||||||||||||| || |||||||| || |||||||||||| ||||||| || Sbjct 53718 ATGGAGAACATCCACTCTGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGCC 53660 Score = 122 bits (134), Expect = 1e-21 Identities = 182/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||||||||||| |||||||| ||||| | | ||| | ||||| || Sbjct 53288 ATCATCACCGAGGCCGTCGCCATCGAGAAGGAGTTCTTGACTGAGGCTCTGCCATGCGCC 53229 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| ||||||||||| ||| | |||||| |||||||| | | ||||| |||||||| | Sbjct 53228 CTCCTCGGCATGAACTCCAAC-CTCATGAAGCAGTACATCG-AGTTTGTTGCCGACCGTC 53171 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| | |||||| ||| | || | ||||| ||| | ||| Sbjct 53170 TCCTGGTCGCTCTGGGCAAC-GAGAAGGTTTACAAGTCGTCGAACCCCTTCGACTTCATG 53112 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| || ||| || || || || ||| Sbjct 53111 GAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAG 53052 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 53051 AAGGCCGGTGTCA 53039 Score = 95.1 bits (104), Expect = 2e-13 Identities = 117/156 (75%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGA 1456180 || |||||||||||||| | ||||||||| | ||| || || || || |||| | Sbjct 53549 AAGAAGGCCGACTGGGCTCTCAAGTGGATCCA---GGATCGCGAGTCCAC-CTATGCCCA 53494 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| || || | ||| || || |||||||||||||| ||| ||| ||| | |||| Sbjct 53493 GCGACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCATTCGCCTCCAT 53434 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||||||||| ||||||||||| || || Sbjct 53433 TTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 53398 >seq48 Length=122101 Score = 107 bits (118), Expect = 3e-17 Identities = 329/505 (65%), Gaps = 23/505 (5%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| ||||| | ||||| | ||| ||| ||||| || ||| ||||| Sbjct 17348 CACAAGGAGGAGTTCGACTCCGCCATTGTCTACGACCGTGACTTCGGTTACCAATACTTC 17289 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATT---GTCGTCGA 259797 || | ||| || | || | || ||||| ||| || |||| | || ||||| Sbjct 17288 GGCTTCAAGACACTCGAGC-GTTCGTACCTCCTCAA---GCTCGATGGTAAAGTTGTCGA 17233 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 |||||| ||| | ||| ||||||||||||| | || | |||| | ||| ||||| Sbjct 17232 GCGGCCACAGCACATGATCATGCGTGTCGCTGTCGGTA--TCTGGGGA-GACGATGTCGA 17176 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTC 259917 | | | ||| |||||| | ||||| | |||| ||||| Sbjct 17175 GAGGGTCATTGAG------------ACCTACAACCTGATGTCAAACAAGTTCTTCACACA 17128 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || | ||||| | || ||||| ||||| || | || ||| || || ||||| || Sbjct 17127 TGCCTCCCCCACATTGTTCAATGCTGGCACTCCTCAGCCCCAGCTGTCATCATGCTTCCT 17068 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | |||||||||| || || ||||||||||||||||| | ||| || || | Sbjct 17067 CGTCGACATGAAGGAGGACAGCATTGAGGGCATCTATGACACCTTAAAGACTTGTGCTAT 17008 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 ||||| ||| ||| || || || ||| | || ||| | || ||| | ||| | Sbjct 17007 GATCTCTAAGATGGCGGGTGGAATTGGTCTGAACGTGCACCGCATCCGTGCCACCGGCTC 16948 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 ||| | || ||||| ||||| || || ||| || || ||||| || || || || Sbjct 16947 ATACATCGCTGGCACTAACGGTACCTCTAATGGCATTACCCCAATGCTGCGGGTCTTCAA 16888 Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182 | |||| || || |||||||||||| Sbjct 16887 CAACACCGCCCGATACGTCGACCAG 16863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177724007538448