Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq352 158 4e-33 seq427 132 1e-25 >seq352 Length=41251 Score = 158 bits (174), Expect = 4e-33 Identities = 482/737 (65%), Gaps = 21/737 (3%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||| | || || ||||| ||||| || || |||||||| | ||| | | |||| | Sbjct 4197 CCGCTGTTGGTATTGATTTGGGTACCACCTACTCTTGTGTGGGTGTCTTCCGTGATGACC 4138 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || || ||||| || || || ||| | || || || || | ||| || || | Sbjct 4137 GCATTGAGATCATCGCAAACGACCAGGGAAACCGGACCACCCCTTCCTTCGTCGCTTTCA 4078 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| ||||||||| |||| || ||| | || || || || | || || || | | Sbjct 4077 CCGACACTGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACA 4018 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTT-----TCTGACAAATCTA 349430 | || || || ||||| ||||| | ||||| | ||||| ||||| | || Sbjct 4017 ACACCGTCTTCGATGCGAAGCGGTTGATTGGCCGCAAGTTCCAGGACTCTGA--AGTC-- 3962 Query 349431 CACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAA 349490 || | || | || || || || || | | | || | ||| || | || || | Sbjct 3961 --CAGGCCGACATGAAGCACTTCCCCTTCAA-GATCATCGAGAAG--GGCGGCAAGCCCA 3907 Query 349491 TTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCAT 349547 || |||||||| | || || || || || || || |||| || || ||||| | Sbjct 3906 ACATCGAGGTTGAGTTCAAGGGCGAGACCAAGACC---TTCACCCCAGAGGAGATTTCCT 3850 Query 349548 CAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTG 349607 | ||||| | || ||| || | ||||| | || | |||| || || | Sbjct 3849 CCATGGTCCTCACCAAGATGCGTGAGACCGCTGAGTCCTACCTGGGTGGCACCGTCAACA 3790 Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 | ||||| || ||||| || ||||| || || || | |||||| || || || || | Sbjct 3789 ACGCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAAGCCACCAAGGACG 3730 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| |||||| || | || ||||| | || || || || || ||||| || || | Sbjct 3729 CTGGTCTCATTGCTGGCCTGAACGTTCTGCGTATCATCAACGAGCCTACTGCCGCGGCCA 3670 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787 |||| ||||| || || || | | || || || |||| || || ||| | | Sbjct 3669 TTGCCTATGGTCTCGACAAGAAGGTCGAGGGCGAGCGCAACGTTCTGATCTTCGATCTGG 3610 Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847 ||||||||||||| ||||| || || || || | || ||||| || || || ||||| Sbjct 3609 GTGGTGGTACTTTCGATGTCTCGCTCCTGACCATCGAGGAGGGTATCTTCGAGGTTAAGT 3550 Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATT 349907 | || || ||||| || || || ||||| || || || || || || || || || | Sbjct 3549 CCACCGCCGGTGACACTCACCTGGGTGGTGAGGACTTCGACAACCGCCTGGTCAACCACT 3490 Query 349908 TTGTTAAAGAATTTAAG 349924 | ||||| || || ||| Sbjct 3489 TCGTTAACGAGTTCAAG 3473 >seq427 Length=29395 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || |||||||| || || || ||||| || || || Sbjct 25472 CATACCACCACGGAGGCGGAGGACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTC 25413 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || |||||||| ||||| ||||| ||||| || || Sbjct 25412 GGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGG 25353 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | |||||| | || Sbjct 25352 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTC 25293 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| || || || || || || || |||||||| Sbjct 25292 GACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 25242 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || ||||||| || || |||||| Sbjct 25681 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCCATCT 25622 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || ||||| || || ||||| ||||| || || |||||||| || || ||| Sbjct 25621 TCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC 25562 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| |||| || || || ||||||| || |||| || || ||||| || | ||| Sbjct 25561 TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCAAGCGTGATCGTC 25502 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || ||||||||||| Sbjct 25501 TTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 25470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515236849565912