Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq48 262 4e-65 seq116 172 6e-38 seq56 102 9e-17 >seq48 Length=122101 Score = 262 bits (290), Expect = 4e-65 Identities = 510/748 (68%), Gaps = 4/748 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | |||||| || ||||| | | | ||| |||||| ||| Sbjct 17215 TCATGCGTGTCGCTGTCGGTATCTGGGGAGACGATGTCGAGAGGGTCATTGAGACCTACA 17156 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || || ||| | || || ||||||| ||||| || Sbjct 17155 ACCTGATGTCAAACAAGTTCTTCACACATGCCTCCCCCACATTGTTCAATGCTGGCACTC 17096 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| || ||| |||| |||||||| || | |||||||| ||| || || |||| Sbjct 17095 CTCAGCCCCAGCTGTCATCATGCTTCCTCGTCGACATGAAGGAGGACAGCATTGAGGGCA 17036 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 |||| || || | ||| ||||| ||||| ||| | ||||||| || ||| | Sbjct 17035 TCTATGACACCTTAAAGACTTGTGCTATGATCTCTAAGATGGCGGGTGGAATTGGTCTGA 16976 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || ||| | | ||||||| | |||| || ||| || || ||||| | | || Sbjct 16975 ACGTGCACCG-CATCCGTGCCACCGGCTCATACATCGCTGGCACTAACGGTACCTCTAAT 16917 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || || || ||||| || |||||||||||||| ||||| |||||| |||||||||| Sbjct 16916 GGCATTACCCCAATGCTGCGGGTCTTCAACAACACCGCCCGATACGTCGACCAGGGTGGC 16857 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | ||||| |||||||| ||||| ||||||||||| | | ||| Sbjct 16856 AACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATGGCACGCCGATGTATTCGAG 16797 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || || || ||||| ||| || ||| | || ||||| || |||||| || || Sbjct 16796 TTCCTTGACCTGCGCAAGAACCACGGTAAGGAGGAGATCCGAGCCCGTGATCTTTTCCTT 16737 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||||| || || || |||||| | ||| |||||| ||| || ||| |||| Sbjct 16736 GCCCTCTGGATCCCCGATCTTTTCATGAAGCGGGTCGAGAAGAACGGTGACTGGACCCTG 16677 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||| || |||||| | | || |||||||||||||||| | | | Sbjct 16676 ATGTGCCCTAACGAGTGTCCTGGCCTCGCCGACTG-CTACGGTGAGGAGTTTGAGGCTCT 16618 Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATG 53850 || | ||||| |||| || |||| | ||||| | || | || Sbjct 16617 CTACGAGCAGTACGAGAAGGAGGGTCGTGGTCGCAAGACCATGAAGGCCCAGAAGCTGTG 16558 Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910 | |||| || ||| || ||| ||||| || | || | |||| |||||||| Sbjct 16557 GTATGCCATTCTCGAGGCTCAGACTGAGACTGGCAACCCCTTCATGCTGTACAAGGACCA 16498 Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| ||||||||||||||||||| Sbjct 16497 CGCCAACCGGAAGAGCAACCAGAAGAAC 16470 Score = 118 bits (130), Expect = 1e-21 Identities = 299/446 (67%), Gaps = 9/446 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| |||| | |||| |||||||| || ||||||||| | |||||| |||||||| Sbjct 15944 CGCAACAGCCTGTTGCTGGCACCAATGCCCACTGCGTCGACGTCGCAGATCCTGGGCAAC 15885 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| || ||||| ||||| |||||||||||| ||| || || || || ||| Sbjct 15884 AATGAGTGCTTTGAGCCATACACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAG 15825 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG-CAGAAGATCAACAAGTGGAACCC 55662 || | ||||| ||| ||| ||| ||| ||| || || | |||| Sbjct 15824 TTCCAGGTCGTCAACCCTTGGCTCCTCAGGGATCTGACAG-AGCTCGGCTTGTGGTCTGA 15766 Query 55663 GCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCC 55719 | || |||| ||| | || | | | || ||| | |||| || || ||| Sbjct 15765 GGCCATGAAGAACCGTATCATCGCCG-AGGATGGTTCCATTCAGAACATTCCTAGCATCC 15707 Query 55720 --TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 ||| | |||||| | ||| ||| || |||||||| | |||| || | | Sbjct 15706 CGGCTG-ATATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCTCAGAGGACCATTGTG 15648 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 | ||| |||||| |||||||| | ||| || ||||| |||||||| |||||| |||| Sbjct 15647 CAGATGGCTGCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATCCACATG 15588 Query 55838 GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTC 55897 | | || || ||| |||| | | | |||||||| ||| |||||| || ||| Sbjct 15587 AGGGAGCCATCCATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTC 15528 Query 55898 AAGACGGGTATGTACTATCTGCGGAC 55923 ||||| || |||||||| || || || Sbjct 15527 AAGACTGGCATGTACTACCTCCGCAC 15502 >seq116 Length=92512 Score = 172 bits (190), Expect = 6e-38 Identities = 215/295 (73%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| ||||| |||||||| || | |||||||| ||| | ||||| || || || | || Sbjct 12563 CAAGCGCGTAAAGATGTAACGAGCGCTGGCCGAATCGCTACCACCGGCAAGACGAGAACC 12622 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||| | ||| ||||| |||| ||| | |||||||| || || || ||||| ||||| Sbjct 12623 AAAGTTACCACTTGGCTCCAGGATGTTTATGTTGTTGGATCCAACAAAGTTCTGGGCCAA 12682 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 || ||||| ||||| | |||||| |||||||| || ||||| || | || Sbjct 12683 GCCAACGATCGTCTGCTGCAAGGAAGTTTCACCATGGTGATAGGCAGTCTGTTCGGAGAC 12742 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 |||||| ||||| | | |||||| ||||| |||||| ||| ||||| |||||||| Sbjct 12743 GTATCCAGCCAATTCAACAACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGGCGTA 12802 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 ||| ||||||||||| || || || |||||||| ||| ||||| || ||| Sbjct 12803 AATGACCTTGCGCTGACCAGGCTTTAACCCGTCCACAACGGACGGAATGGACCGC 12857 Score = 167 bits (184), Expect = 3e-36 Identities = 203/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 117301 GCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAA 117360 ||| || || |||||||||| ||| || | ||| | ||||| |||||||| | ||| || Sbjct 12566 GCGCGTAAAGATGTAACGAGCGCTGGCCGAATCGCTACCACCGGCAAGACGAGAACCAAA 12625 Query 117361 TTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 | ||||| ||||||| || ||| | |||||||| || |||||||| || |||||| Sbjct 12626 GTTACCACTTGGCTCCAGGATGTTTATGTTGTTGGATCCAACAAAGTTCTGGGCCAAGCC 12685 Query 117421 GACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480 || ||||| || | | | |||||||||||||| || ||||| || | ||||| Sbjct 12686 AACGATCGTCTGCTGCAAGGAAGTTTCACCATGGTGATAGGCAGTCTGTTCGGAGACGTA 12745 Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540 || |||| | | | |||||| |||| ||||| ||| ||||| |||||| ||||| Sbjct 12746 TCCAGCCAATTCAACAACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGGCGTAAAT 12805 Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACG 117577 ||||||||||||| ||||| | || ||| | ||| Sbjct 12806 GACCTTGCGCTGACCAGGCTTTAACCCGTCCACAACG 12842 >seq56 Length=117397 Score = 102 bits (112), Expect = 9e-17 Identities = 298/451 (66%), Gaps = 16/451 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| ||||| ||||||||||| || | | |||||||||||||| Sbjct 53056 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATG 53115 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 ||||||| |||||| | ||||| |||||| |||| | | ||| ||| Sbjct 53116 AAGTCGAAGGGGTTCGACGACTTGTAAA---CCTTCTCGTTGCCCAGAGCG-ACCAGGAG 53171 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 || || || ||||| | ||||||||| |||| | | |||||||| ||| Sbjct 53172 ACGGTCGGCAACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGGGC 53231 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTG--GACAAT 74695 ||| ||||| ||||| || | ||||| |||| | || ||| | || || Sbjct 53232 GCATGGCAGAGCCTCAGTCAAGAACTCCTTCTCGATGGCGACGGCCTCGGTGATGATGTC 53291 Query 74696 CTTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGGCAA 74754 || | | | ||| || | || ||||||||||||| | | | | || ||| | Sbjct 53292 CTCGACACGCTGCTTGCTTGGACGGTT---CCTCAGGTGAGAGAACAGGAGACA-GGCGA 53347 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| || ||||| | || | || || || || | |||||||||| Sbjct 53348 AGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCA 53407 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || ||||||||||| | ||| || |||| ||| | || |||||||||||||| | Sbjct 53408 TGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAATGCGCCGCTGAAGAAGATGCCCT 53467 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGC 74905 |||| || ||||| || || || || || Sbjct 53468 CGACGGCAGCGAAGGCAACCAGTCGCTGGGC 53498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209816459200