Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq399 152 4e-32 >seq399 Length=33074 Score = 152 bits (168), Expect = 4e-32 Identities = 281/404 (70%), Gaps = 16/404 (4%) Strand=Plus/Plus Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 |||||||||||| | ||||| |||||||| || || ||||| || ||| Sbjct 2661 CACGTAAAACTGCGCAAACATG---TGGCACGGCGGCAGCGCCATCTTCTTCAGGTCGGC 2717 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 30174 |||||||| |||| || ||| ||||||| ||| | ||||||| | ||| || || Sbjct 2718 CGGGTTCCATGCGCTCATGATAATGCGCCGGTCGTGAGGGTTGTGCTTGAGCTTGTGGAT 2777 Query 30175 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30234 ||| || |||||| || || ||| |||| |||||| ||| | ||| ||| Sbjct 2778 CACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCCTTGGCGTCGACGTA 2834 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 ||| || || ||||||| |||||||||||||||||| || || ||||| || |||| | Sbjct 2835 CTCCGCCCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCTAGGTCGCCGGCTTCACG 2894 Query 30295 GTGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30353 ||| | |||||| | |||| | | || | || |||||| ||||||||||||| | Sbjct 2895 GTG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGA 2953 Query 30354 CCCCCTTCTCAGAGAGCTCTTTGGAGTTTGT-GGACCCTCTGACGAACCACAGCAGCTCC 30412 | |||| ||| ||||| || ||| |||| | || ||||||||||||||| Sbjct 2954 CGCCCTGCTCTGAGAGGGACAGCGACGATGTCTCACCCGC-GATGAACCACAGCAGCTCT 3012 Query 30413 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | | |||||||| ||||| | ||| || || ||||| || Sbjct 3013 GCGAGAACGGCCTTTTGGAAGACGCGCTTTGTGGTCAGGAGCGG 3056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29852 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCT 29911 ||||||||||| ||||| | ||||| || |||| || || ||||| ||||| Sbjct 2386 GGCTCCCTCTCCAGCTGCACCCGCAGCGCGTCGACGTGGTCTGCATACACGTGCGCGTCG 2445 Query 29912 CCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29970 |||| | ||| | || || || || | || || ||||| || ||||||| ||| Sbjct 2446 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACACGTGCGCGATCATGTGCGT 2504 Query 29971 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 30030 || || ||||||||||||||||| || || || || || |||||||| | || | ||| Sbjct 2505 CAGCAGCGAGTAGCTGGCGATGTTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 2564 Query 30031 GTAGAGCTGACA 30042 ||| ||||| || Sbjct 2565 GTACAGCTGGCA 2576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305923475168