Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq427 102 6e-17 seq157 98.7 7e-16 >seq427 Length=29395 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || ||| | Sbjct 25014 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACGCTCGAGGTCGAGTCCTCC 25073 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| || || | || || || || Sbjct 25074 GATACCATCGACAATGTCAAGTCCAAGA-TCCAAGACAAGGAGGGCATCCCCCCTGACCA 25132 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| ||||| || |||| ||||| | ||| ||||| Sbjct 25133 GCAGCGTCTTATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCTCCGACTACAA 25192 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 25193 CATTCAAAAGGAGTCTAC 25210 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | ||||| || |||||||| || || || || || | Sbjct 25470 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCA 25529 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| || || | || ||||| || Sbjct 25530 GACACGATTGACAACGTGAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCAG 25589 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || ||||||| | || || || || |||||| Sbjct 25590 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAAC 25649 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 25650 ATCCAGAAGGAGTCGAC 25666 >seq157 Length=302622 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 142473 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 142414 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || ||||| || Sbjct 142413 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 142355 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || |||| || || | ||| ||||| Sbjct 142354 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 142295 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 142294 CATCCAGAAGGAGTCCAC 142277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005875979232