Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq157 143 6e-29 seq427 140 8e-28 seq255 132 1e-25 seq230 125 2e-23 >seq157 Length=302622 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| || ||||| || || |||| ||||| |||| | || Sbjct 142252 ACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 142311 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 142312 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCC 142371 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 142372 TTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 142431 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | || || | ||| | ||||| Sbjct 142432 GGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 142473 >seq427 Length=29395 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||||||||| || || | ||||| |||| | || | || || Sbjct 25453 AGGACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 25394 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || ||||| |||||||| Sbjct 25393 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 25334 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||| || |||| || || || | || || ||| Sbjct 25333 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTC 25274 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||| || | ||| | ||||| Sbjct 25273 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 25242 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | | || | |||||| Sbjct 25681 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCCATCT 25622 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || || || || ||||| || ||||| || |||||||| Sbjct 25621 TCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC 25562 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| || || |||||||| | || || || | |||||||||| Sbjct 25561 TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCAAGCGTGATCGTC 25502 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 25501 TTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 25470 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || ||||| || || || ||||| | ||||| |||| | || Sbjct 25235 ACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGT 25176 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || || |||||||| || || ||||| || || || || Sbjct 25175 GCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCC 25116 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| |||||||| || |||| || || || | Sbjct 25115 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCGAG 25056 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||||||| || | || || | ||| | ||||| Sbjct 25055 CGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 25014 >seq255 Length=57583 Score = 132 bits (146), Expect = 1e-25 Identities = 199/281 (71%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| || || ||||| |||| | ||||| || | ||||||| ||||||| | | Sbjct 10023 AACATTCTACTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCATTTTCTGTATT 9964 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTT 7558 || || | |||||| || || ||| ||| |||||| | ||| |||| | | Sbjct 9963 AATTAGAATGGAATTAAGTGGACCAGGTGTTCAGTATATTGCGG----ATAACCAATTAT 9908 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| ||| ||||| || || || | | ||||| |||||| | |||||||| | Sbjct 9907 ATAACAGTATCATTACAGCTCACGCTATATTAATGATATTCTTTATGGTTATGCCAGCAT 9848 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | || || || || ||||||| | | || |||||| |||||| ||||||||||| | Sbjct 9847 TAATCGGAGGGTTTGGAAATTTCCTAATGCCCTTAATGGTTGGTGGCCCTGATATGGCAT 9788 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | ||||| ||||| |||||||||||||||||| |||| ||| Sbjct 9787 TCCCAAGACTTAATAATATAAGTTTTTGATTATTACCACCT 9747 >seq230 Length=63387 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || || | ||||| || |||||||| || |||||||| Sbjct 45659 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 45718 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || ||||| || |||||||| |||||||| ||| || ||| Sbjct 45719 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 45778 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| ||||| || | ||||| ||||||||||||| || || | ||| Sbjct 45779 ATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 45837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517387507376