Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq399 109 4e-19 >seq399 Length=33074 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 ||||||||||| ||||| | || ||||| || |||||||| || ||||| || || Sbjct 2386 GGCTCCCTCTCCAGCTGCACCCGCAGCGCGTCGACGTGGTCTGCATACACGTGCGCGTCG 2445 Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742 |||| | ||| | || || || || | || || ||||| || ||||||| ||| Sbjct 2446 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACACGTGCGCGATCATGTGCGT 2504 Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTG 29802 || || ||||||||||||||||| || || || || || |||||||| | || | ||| Sbjct 2505 CAGCAGCGAGTAGCTGGCGATGTTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 2564 Query 29803 GTAGAGCTGGCA 29814 ||| |||||||| Sbjct 2565 GTACAGCTGGCA 2576 Score = 102 bits (112), Expect = 7e-17 Identities = 265/404 (66%), Gaps = 16/404 (4%) Strand=Plus/Plus Query 29833 CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTT 29889 |||||||||||| | ||||| |||||||| || || ||||| || ||| Sbjct 2661 CACGTAAAACTGCGCAAACATG---TGGCACGGCGGCAGCGCCATCTTCTTCAGGTCGGC 2717 Query 29890 GGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 29946 |||||||| || | || ||| ||||||| ||| | ||||||| | ||| || || Sbjct 2718 CGGGTTCCATGCGCTCATGATAATGCGCCGGTCGTGAGGGTTGTGCTTGAGCTTGTGGAT 2777 Query 29947 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNN 30006 ||| || |||||| || || ||| |||| |||||| | Sbjct 2778 CACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCCTTGGCGTCGACGTA 2834 Query 30007 NNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30066 | ||||||| |||||||||||||||||| || || ||||| || |||| | Sbjct 2835 CTCCGCCCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCTAGGTCGCCGGCTTCACG 2894 Query 30067 GTGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30125 ||| | |||||| | |||| | | || | || |||||| ||||||||||||| | Sbjct 2895 GTG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGA 2953 Query 30126 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT-GGACCCTCTGACGAACCACAGCAGCTCC 30184 | |||| ||| ||||| || ||| |||| | || ||||||||||||||| Sbjct 2954 CGCCCTGCTCTGAGAGGGACAGCGACGATGTCTCACCCGC-GATGAACCACAGCAGCTCT 3012 Query 30185 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 | | |||||||| ||||| | ||| || || ||||| || Sbjct 3013 GCGAGAACGGCCTTTTGGAAGACGCGCTTTGTGGTCAGGAGCGG 3056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406158725096944