Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq399 138 8e-28 >seq399 Length=33074 Score = 138 bits (152), Expect = 8e-28 Identities = 277/403 (69%), Gaps = 16/403 (4%) Strand=Plus/Plus Query 27328 ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384 ||||||||||| | | ||| |||||||| || || ||||| || ||| Sbjct 2662 ACGTAAAACTGCGCAAACATG---TGGCACGGCGGCAGCGCCATCTTCTTCAGGTCGGCC 2718 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCC 27441 |||||||| |||| || ||| ||||||| ||| | ||||||| | ||| || || | Sbjct 2719 GGGTTCCATGCGCTCATGATAATGCGCCGGTCGTGAGGGTTGTGCTTGAGCTTGTGGATC 2778 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTAC 27501 || || |||||| || || ||| |||| |||||| || | ||| |||| Sbjct 2779 ACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCCTTGGCGTCGACGTAC 2835 Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561 || || || ||||||| ||| |||||||||||||| || || ||||| || |||| | | Sbjct 2836 TCCGCCCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCTAGGTCGCCGGCTTCACGG 2895 Query 27562 TGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 27620 || | |||||| | |||| | | || | || |||||| ||||||||||||| || Sbjct 2896 TG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGAC 2954 Query 27621 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGT-GGACCCTCTGACGAACCACAGCAGCTCCT 27679 |||| ||| ||||| || ||| |||| | || ||||||||||||||| Sbjct 2955 GCCCTGCTCTGAGAGGGACAGCGACGATGTCTCACCCGC-GATGAACCACAGCAGCTCTG 3013 Query 27680 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 | | |||||||| ||||| | ||| || || ||||| || Sbjct 3014 CGAGAACGGCCTTTTGGAAGACGCGCTTTGTGGTCAGGAGCGG 3056 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||||||||| ||||| | ||||| || ||||| || || ||||| ||||| Sbjct 2386 GGCTCCCTCTCCAGCTGCACCCGCAGCGCGTCGACGTGGTCTGCATACACGTGCGCGTCG 2445 Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236 |||| | ||| | || || || || | || || ||||| || ||||||| ||| Sbjct 2446 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACACGTGCGCGATCATGTGCGT 2504 Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296 || || ||||||||||||||||| || || || || || |||||||| | || | ||| Sbjct 2505 CAGCAGCGAGTAGCTGGCGATGTTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 2564 Query 27297 GTAGAGCTGACA 27308 ||| ||||| || Sbjct 2565 GTACAGCTGGCA 2576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369503128954424