Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001630405.1_202016-04-25] 904 sequences; 59,495,866 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq427 168 1e-36 seq157 168 1e-36 seq230 147 5e-30 seq56 105 1e-17 seq656 98.7 2e-15 seq116 84.2 5e-11 >seq427 Length=29395 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| ||| || || ||||||||||| | Sbjct 25469 ACCACCACGGAGGCGGAGGACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGA 25410 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| ||| || ||||| || Sbjct 25409 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGG 25350 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| || || || | ||||| Sbjct 25349 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGAC 25290 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || |||| |||||| ||||| |||||||| Sbjct 25289 CTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 25242 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | || || ||||| ||||||||||| | Sbjct 25241 ACCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGA 25182 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| ||||| || ||||||||||| | ||| || |||||| || Sbjct 25181 GAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGG 25122 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||| | || || | ||||| || || || | ||||| Sbjct 25121 GATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCGAC 25062 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 25061 CTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 25014 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || ||||| || | ||| || || |||||||||||||||| Sbjct 25696 CCGCCACGGAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAT 25637 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| |||||||| || | || || || || || || | ||| || ||||| ||| Sbjct 25636 AGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGA 25577 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || ||| | || || ||||| || | ||||| Sbjct 25576 ATTCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACC 25517 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 25516 TCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 25470 >seq157 Length=302622 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 142246 ACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 142305 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 142306 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 142365 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 142366 AATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 142425 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 142426 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 142473 >seq230 Length=63387 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 45659 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 45718 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| ||||| ||||||||||| |||||||| | || ||| | ||| Sbjct 45719 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 45778 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || || || ||||| ||||| ||||||| ||||| ||||| Sbjct 45779 ATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 45837 >seq56 Length=117397 Score = 105 bits (116), Expect = 1e-17 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || || | || ||||||||| | || ||| | || ||| Sbjct 53288 ATCATCACCGAGGCCGTCGCCATCGAGAAGGAGTTCTTGACTGAGGCTCTGCCATGCGCC 53229 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||||||||| | | |||||| ||| || ||||| || || || || ||| | Sbjct 53228 CTCCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTC 53169 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || || || || ||||||| || || || || ||||||||||| || |||||| Sbjct 53168 CTGGTCGCTCTGGGCAACGAGAAGGTTTACAAGTCGTCGAACCCCTTCGACTTCATGGAG 53109 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || ||| || || || |||||||| || ||||||||| | || || || | | Sbjct 53108 AACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAGAAG 53049 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 53048 GCCGGTGT 53041 >seq656 Length=190426 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 316982 CGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCA 317041 |||| ||||| |||||||| | |||| || | || | | ||||| || || | Sbjct 18196 CGTCAAGGTCGTGCTCAACGAACACAGTCTTGACCTCGCTCTGCTTGGGGAAACCCTCGA 18137 Query 317042 ACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAA 317101 ||| |||| || || | ||| || || ||||| || ||||| ||||||||||||| Sbjct 18136 CCTGCTCGTTGTTGATGGCACGCATGAGGGTGGACTTTCCGGCACCGTTGGGGCCGCAAA 18077 Query 317102 GACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCAC 317161 |||| || ||| || ||| || | ||||||||||| || || ||||| ||| Sbjct 18076 GACCGTAACGACGGCCACGCTTGAGGCGGATGCGGGTGTTGTTGAGCAGGATCTTGGCAC 18017 Query 317162 CATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 | || || || ||||||||||| || || ||||| Sbjct 18016 CGTAGGCGAGCGAGAACTCACACTCGCAAAGGTC 17983 >seq116 Length=92512 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 ||||||||||||| || || | | ||| |||| ||||| ||| ||| | ||| Sbjct 12647 GTTTATGTTGTTGGATCCAACAAAGTTCTGGGCCAAGCCAACGATCGTCTGCTGCAAGGA 12706 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 || || ||||||||||| | ||||||| || || ||| || | | ||||||| Sbjct 12707 AGTTTCACCATGGTGATAGGCAGTCTGTTCGGAGACGTATCCAGCCAATTCAACAACCTT 12766 Query 273977 CACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTT 274036 | || |||||||||| |||||||| || || | ||||| ||||| ||||| Sbjct 12767 CTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGGCGTAAATGACCTTGCGCTGACCAGGCTT 12826 Query 274037 GAACCCATCAACGACCGATGGAAT 274060 ||||| || || || || ||||| Sbjct 12827 TAACCCGTCCACAACGGACGGAAT 12850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727076143216