Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq561 86.0 6e-12 >seq561 Length=46336 Score = 86.0 bits (94), Expect = 6e-12 Identities = 178/263 (68%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 ||| | |||||||| ||||||||||| ||||| || ||||| ||||| ||||| || Sbjct 7886 TACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGGGCCTCA 7827 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | ||||| || || || ||| || ||| | || || ||||| |||||||| || Sbjct 7826 GGGATTTGGACCTCGCCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCATCTGAA 7767 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGT-GTAAGAACG 17434 |||||||| || || | || || | ||| || || || |||| | | Sbjct 7766 GCGGCGAAGAAGGCGAGGATGTGGGAGACGAAGTAACGCTCATCATCGGTCAGGCGGTTG 7707 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 | |||||| | | ||| ||||| | ||| | ||||| | |||||| ||| |||| | Sbjct 7706 CTCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCTTCAGCGGTCCAGAAAGAAGCCTCA 7647 Query 17495 GCCTTTTTATACATATTCCAAAT 17517 ||| || ||||| | ||| || Sbjct 7646 TGCTTCTTGTACATTTGCCAGAT 7624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533495902280