Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1209 131 2e-25 seq561 107 2e-18 >seq1209 Length=374226 Score = 131 bits (144), Expect = 2e-25 Identities = 432/671 (64%), Gaps = 8/671 (1%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | | ||| || |||| | || || || ||||| || |||||||| ||| Sbjct 93341 GGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGATC 93282 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || ||||| | || || || | | || ||||| || || ||||| || Sbjct 93281 CAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGG 93222 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | | ||||| |||||||| || | ||| || | | | || || Sbjct 93221 TCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGGA 93162 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | || | || ||||| || | |||| || ||| ||| Sbjct 93161 CGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGA 93102 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | || || ||||| | ||| ||||| || | ||| || || ||||||| ||| Sbjct 93101 GTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATACGG 93042 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355 | || || || || || ||||| || ||||| | || ||| || | || Sbjct 93041 TGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCACATGTCTTGAGTGTG 92982 Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 54415 |||||||||||||| || || || ||| |||||| | || || || |||| ||| Sbjct 92981 TCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGG 92922 Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 | | ||| || ||||| |||| || || || || || || || | || | || Sbjct 92921 GGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGAC 92862 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 54531 | || ||||| |||||||| | || | ||| || |||| || ||||| Sbjct 92861 ATGAGGTTGTAGGTCTCGATGACCCTCTCCACATCATCGCCCCAGATG----CCAACTGC 92806 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 |||||||| | ||||||||| || | || || | ||| || | ||||| | ||| Sbjct 92805 AACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTGCCGTCGAGCTTCAGGAGGTA 92746 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || | || || || || || || | ||| ||||| || || || | ||| Sbjct 92745 GGAGCGCTCGAGGGTCTTGAACCCGAAGTATTGGTAGCCGAAGTCGCGATCATAGACAAT 92686 Query 54652 AACTGAGTTGA 54662 | |||| || Sbjct 92685 GGCCGAGTCGA 92675 >seq561 Length=46336 Score = 107 bits (118), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || || ||||| ||| ||| || ||||| || | | || | ||||||||| Sbjct 8248 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAA 8189 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || ||||| || ||||| ||||||||||| || ||||| || ||||| || || | || Sbjct 8188 AAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 8129 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302 ||||| || || || || || || ||||| | || | | |||| || || Sbjct 8128 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCTGGGCATAGGTGGACTCG 8069 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 | ||| || |||||||| ||||||| ||||||||||| Sbjct 8068 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 8031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707714336080