Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20]
1,871 sequences; 55,029,878 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 131 2e-25
seq561 107 2e-18
>seq1209
Length=374226
Score = 131 bits (144), Expect = 2e-25
Identities = 432/671 (64%), Gaps = 8/671 (1%)
Strand=Plus/Minus
Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055
|| ||||| | | ||| || |||| | || || || ||||| || |||||||| |||
Sbjct 93341 GGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGATC 93282
Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115
|| ||||| | || || || | | || ||||| || || ||||| ||
Sbjct 93281 CAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGG 93222
Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175
||||||||| | | | ||||| |||||||| || | ||| || | | | || ||
Sbjct 93221 TCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGGA 93162
Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235
|| ||||| || ||||| || | || | || ||||| || | |||| || ||| |||
Sbjct 93161 CGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGA 93102
Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295
| || || ||||| | ||| ||||| || | ||| || || ||||||| |||
Sbjct 93101 GTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATACGG 93042
Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355
| || || || || || ||||| || ||||| | || ||| || | ||
Sbjct 93041 TGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCACATGTCTTGAGTGTG 92982
Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 54415
|||||||||||||| || || || ||| |||||| | || || || |||| |||
Sbjct 92981 TCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGG 92922
Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475
| | ||| || ||||| |||| || || || || || || || | || | ||
Sbjct 92921 GGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGAC 92862
Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 54531
| || ||||| |||||||| | || | ||| || |||| || |||||
Sbjct 92861 ATGAGGTTGTAGGTCTCGATGACCCTCTCCACATCATCGCCCCAGATG----CCAACTGC 92806
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591
|||||||| | ||||||||| || | || || | ||| || | ||||| | |||
Sbjct 92805 AACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTGCCGTCGAGCTTCAGGAGGTA 92746
Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
||| || | || || || || || || | ||| ||||| || || || | |||
Sbjct 92745 GGAGCGCTCGAGGGTCTTGAACCCGAAGTATTGGTAGCCGAAGTCGCGATCATAGACAAT 92686
Query 54652 AACTGAGTTGA 54662
| |||| ||
Sbjct 92685 GGCCGAGTCGA 92675
>seq561
Length=46336
Score = 107 bits (118), Expect = 2e-18
Identities = 155/218 (71%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| || || ||||| ||| ||| || ||||| || | | || | |||||||||
Sbjct 8248 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAA 8189
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| ||||| || ||||| ||||||||||| || ||||| || ||||| || || | ||
Sbjct 8188 AAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 8129
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302
||||| || || || || || || ||||| | || | | |||| || ||
Sbjct 8128 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCTGGGCATAGGTGGACTCG 8069
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340
| ||| || |||||||| ||||||| |||||||||||
Sbjct 8068 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 8031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593707714336080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |