Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1489 120 3e-22 seq427 95.1 1e-14 seq28 84.2 2e-11 >seq1489 Length=43664 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| || | |||| ||| |||||||| |||||||| ||||| | Sbjct 23120 TTCCACCGCGGAGGCGGAGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGG 23061 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || | ||||| ||||| || || ||| | || || | ||||||||| || Sbjct 23060 ACAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGG 23001 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| ||||| || || | | ||| ||||||| || ||| Sbjct 23000 GGATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGA 22941 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || || ||||| Sbjct 22940 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| |||| || |||||||| || ||||| ||||| | Sbjct 23347 TCCGCCACGGAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGA 23288 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| || |||| |||||||||||||| || |||| || | ||||||||| || Sbjct 23287 GAGGGTCCGGCCGTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGG 23228 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| |||||||| |||||| || || | | | | || || | |||| Sbjct 23227 GATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCAC 23168 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | || || ||||| || || | || |||||||| || |||||| Sbjct 23167 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTGCATT 23119 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || ||||| ||||| | ||||| || ||||||| || || ||||| Sbjct 22860 GTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 22801 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||| || ||| | ||| |||||||| ||||| || Sbjct 22800 GCGAAGATCAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTT 22741 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||||||| || ||| || | ||| |||||||||||||| | || Sbjct 22740 ACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 22681 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 22680 TTGACGAAGATCTGCAT 22664 >seq427 Length=47822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | || | ||||||||||| || ||||| ||||| | Sbjct 19397 CCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19338 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || || | ||||||||| ||| Sbjct 19337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19278 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 19277 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19218 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 19217 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19171 >seq28 Length=192849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | ||||| || | ||||| ||||| ||||| || | | Sbjct 42567 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 42508 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | |||| ||||||||| ||| | ||| |||||||| |||||| || || | | Sbjct 42507 TCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGT 42448 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||| || ||| || |||| || | ||| ||||||||||| || Sbjct 42447 CGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 42402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249571302636