Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1266 105 1e-17 seq576 93.3 9e-14 >seq1266 Length=56925 Score = 105 bits (116), Expect = 1e-17 Identities = 185/268 (69%), Gaps = 15/268 (6%) Strand=Plus/Minus Query 254103 GTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG 254162 ||||| ||||| ||||| || ||||| ||||| | |||||||| ||| || ||||||| Sbjct 49425 GTGCTGGAGCTCAACGCCTCGGACGAGCGCGGCATCGACGTCGTGCGCAACCGGATCAAG 49366 Query 254163 ACTTTCTCCAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTG 254222 ||| | ||| | | | || | || || | ||| | ||||||||| Sbjct 49365 GGCTTCGCGCAGAAGAAGGTGACGCTG-------CCCGCGGGCCGGCA--CAAGCTCGTC 49315 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 |||||||||||||| |||| ||||||| | | ||||||| || || | || |||||| Sbjct 49314 ATCCTGGACGAGGCCGACAGCATGACGTCGGGCGCGCAGCAGGCGCTGAGGCGGACGATG 49255 Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC---GAAGATC 254339 |||| ||||| |||||| || | | | ||||||| | ||| |||||| Sbjct 49254 GAGATCTACTCCAACACGACGCGCTTCGCCTTCGCGTGCAACCA---GTCCAACAAGATC 49198 Query 254340 ATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367 |||| |||||| || |||||||||| Sbjct 49197 ATCGAGCCGCTGCAGTCGCGGTGCGCCA 49170 >seq576 Length=224932 Score = 93.3 bits (102), Expect = 9e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| ||||| | || || ||||||||||||| || || ||||| || || || || || Sbjct 27447 CCTACCTCACCTCCTCTTGTACGGTCCTCCCGGCACCGGAAAGACCTCGACAATTCTTGC 27388 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || ||||| | | | |||| | ||||||| || || || ||||| |||| || Sbjct 27387 CCTCGCCCGCCGCATCTATGGCGCCGAGAACATGCGACAGATGGTCCTCGAATTGAATGC 27328 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 || ||||| || || | || ||||| ||||| |||||||||||||| Sbjct 27327 CTCCGACGACCGTGGCATTGATGTCGTGCGCGAGCAGATCAAGACTTTC 27279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073740659470528