Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1209 324 1e-83 seq561 149 6e-31 seq1489 111 1e-19 seq427 87.8 2e-12 seq28 87.8 2e-12 >seq1209 Length=374226 Score = 324 bits (358), Expect = 1e-83 Identities = 1218/1891 (64%), Gaps = 44/1891 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGT---TTGGTGCGAAGATAATACAT 22161 || ||| || || ||||| |||| |||||| | | | |||||| || || ||||| Sbjct 94548 CTGGTCGACAGTGAACTGGATGGG---TGCGGCTGCTGCCTGGGTGCGGAGGTAGTACAT 94492 Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCC-ATAAC 22220 ||| ||||| ||||| | |||||| | || || || || | || || || Sbjct 94491 GCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGA 94432 Query 22221 TCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280 | ||| ||||| | || | |||||| ||| ||||| || || || || || | Sbjct 94431 T-GGCTCTCGCATGTGGATGTTAAGTGACTGAGACTGGTCGATGAAGGCGCCACGGTCAG 94373 Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 | ||||| | | | ||| | | || |||||||| |||||||||||||| | ||| Sbjct 94372 CAGCCATCTGCACAATTGTCCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGA 94313 Query 22341 TCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399 | || ||| || | | || | |||| ||||| |||| | | ||||| || Sbjct 94312 TATCAGCCGGGAT-GCTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTC 94254 Query 22400 TTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459 || || | || |||||| || | | |||| || ||| || | |||| || Sbjct 94253 TTCATGGCCTCAGACCACAAGCCAAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACG 94194 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || |||||||| | | || || || ||||| |||||||| || | || ||||| Sbjct 94193 ACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAG 94134 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 | || ||||| ||||| ||||| | ||| || || || ||||| || |||| || | Sbjct 94133 CACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAG 94074 Query 22580 GAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAG 22635 ||| | | || || |||| | || |||||| | || |||||||||||| Sbjct 94073 CTGTTGCGAATACCAGTCTCCTTGA--TCTTGGCCTTGAGGGCGTC--CCAGTCCCACAG 94018 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGG 22693 || || ||| | || || |||||| ||| | || | | ||| ||||| || ||| Sbjct 94017 GTCAGAAGGCTTGACGTT---CCACATGTCGAACTGGAGGATGCCCTGCGACACG--GGG 93963 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753 ||||| ||||| || | ||| | || | | | ||||| |||| | || | Sbjct 93962 CTGCCCTCGTATGTCTTGTATGTGCCTTCCACCTTGGCAATGTCGCTGGATGCTGTGAGA 93903 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCG 22813 || | | || || ||||||||||||| |||||||| || || || | ||| Sbjct 93902 GCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGCGCCTCGGGGGAATCG 93843 Query 22814 TACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873 | |||||||| | || ||| || || || | |||||||||||| | ||| || ||| Sbjct 93842 AAGGGCATACGAAGAGCCAAGAATGCATCGGCAAGACCCTGAACGCCGACACCAATAGGT 93783 Query 22874 CGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933 |||| | || || | |||||| || || || || |||||| | Sbjct 93782 CGGTGTCGCATGTTGCTGTTGTATGCCTCCTTCACCGGGTAGTGGTTGACATCGATAATC 93723 Query 22934 CTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG 22993 |||||||||| | | |||| | || | | |||| ||| | Sbjct 93722 TTGTTCAAGTTGCGGACGACAACCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGTAGCAG 93663 Query 22994 CCCGATTGT-ACAACAAACTTGTTGACGGCG-----ATCGAGGCAAGATTGCATACGGCC 23047 |||| | || || | | | |||| || || || || ||||| || || Sbjct 93662 TTG--TTGTCATAATCGACGTAT-GCCGGCAGAGCAATGGAAGCCAGGTTGCAGACAGCG 93606 Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATT---GCTACACTTTATC 23104 ||||| || || || |||||| | || ||||| || || || ||| | || Sbjct 93605 ACCTCATCCGGGGCCGAGTACTCGATGATCTCGGTGCAGAGGTTAGAGCTGCGG---ATG 93549 Query 23105 GTGCCCAAATTGCTCTGGTTGCTTTTTCGATT-GCACGAATCCTTGTAGAGCATGTACGG 23163 ||||||| || |||||||||| || || || || || || ||||| ||||| | || Sbjct 93548 GTGCCCAGGTTCTTCTGGTTGCTCTTCCGGTTTGCGTGA-TCTTTGTACAGCATAAAGGG 93490 Query 23164 CGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACG 23223 | || |||||| ||| | ||| | ||| || ||||| |||| || | | | Sbjct 93489 GTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCACAGCTTCTGGGCCTTCAGT-G 93431 Query 23224 TCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT 23282 || ||| | | ||| || | ||||||||| | ||| | || ||||| || |||||| Sbjct 93430 TCTTACGGCCGCGGCCCTCCTGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCTCACCGT 93371 Query 23283 AACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT 23342 | |||||||| ||||| || | | | || ||||| || |||| || || | Sbjct 93370 AGCAGTCGGCGAGGCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCT 93311 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 | || || |||| || ||||| || ||||| ||||| ||| || || || || || | Sbjct 93310 CGACCCGCTTCATGAACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGA 93251 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 |||||| || ||| |||||| || || | || || || || || || ||||||| Sbjct 93250 TCTCCTCCTTACCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACG 93191 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||||||||||| || || || || || | ||| ||||| ||||| ||||| ||||||| Sbjct 93190 GCTCGAGGTAAATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAACGGG 93131 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCG 23582 | ||||||||| | |||| ||||| || || |||||||| | ||| ||| | Sbjct 93130 CAGTGTTGTTGAAGACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAG 93071 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | ||| || | || || | ||| |||| | || ||||||||| || | Sbjct 93070 CGATGTACGAGCCGGTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCGGCCATCT 93011 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| || ||| || || ||||| ||||||||||||||||||||||| || Sbjct 93010 TGGAGATCATGGCACATGTCTTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCA 92951 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | |||| | ||| || || |||| || | | ||| || | || ||| ||||| | Sbjct 92950 TGTCGACGAGGAAGCAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGG 92891 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 | ||| || || ||| | || ||||| || ||||| || |||||| | || | Sbjct 92890 GCGAGGCATGGGTGAAGAACTTGTTTGACATGAGGTTGTAGGTCTCGATGACCCTCTCCA 92831 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCG 23882 || || || || || | || || ||||| ||||||| || || | |||||| Sbjct 92830 CATCATCGCCCCAGATGCCAACTGCAACACGCATGATCATGTGCTGTGGCCGCTCGACAA 92771 Query 23883 TGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCAT 23942 ||||| | || | || || || || | | || || || || || || | | Sbjct 92770 CTTTGCCGTCGAGCTTCAGGAGGTAGGAGCGCTCGAGGGTCTTGAACCCGAAGTATTGGT 92711 Query 23943 AGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||| ||||| | || |||||||| Sbjct 92710 AGCCGAAGTCGCGATCATAGACAATGGCCGA 92680 >seq561 Length=46336 Score = 149 bits (164), Expect = 6e-31 Identities = 329/486 (68%), Gaps = 12/486 (2%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGA 57972 ||||||||| || ||| | | || ||||| | | ||| | | |||| | ||| || Sbjct 8030 CAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGA-GTCCACCTATGCCCAGC 8088 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | || |||| ||||| |||||||| || || ||||| ||| ||| || | || | Sbjct 8089 GCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCCTTCGCCTCCATCT 8148 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| | ||||| || ||||| ||||| || || || ||| ||||||| | || || | Sbjct 8149 TCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTTCCAACGAGCTTATCTCTC 8208 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | || ||||| || || || || || || ||||| ||| ||| ||| | || || | Sbjct 8209 GTGATGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCT---CAGGAACC 8265 Query 58153 --CGACGCGGG-ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 | | || | | ||| || |||||| ||||| ||||| ||| |||||| || || | Sbjct 8266 GCCCAAGCAAGCAGCGCGTCCAGGACATCATCACTGAGGCCGTCATGATCGAGAAGGAAT 8325 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269 | | ||||| ||||| || ||| ||||||| |||||| | | ||| ||| Sbjct 8326 TCCTGACCGAGGCCCTTCCATGCGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGT 8385 Query 58270 ACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAA 58327 |||||||||| || |||||| | || || ||| || | |||| || ||||| Sbjct 8386 ACATTGAGTTCGTCGCCGACCGCCTCCTGGTCGCTCTGGGCAACGAGAAGGT--GTACAA 8443 Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 || || || || || || ||| | ||||| |||| |||||||| ||||| || Sbjct 8444 GTCGTCGAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTT 8503 Query 58388 CGAAAA 58393 ||| || Sbjct 8504 CGAGAA 8509 >seq1489 Length=43664 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| || || |||||||| |||| || || |||| Sbjct 23120 ATGCAGATCTTTGTCAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTGGAGTCGTCG 23179 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||| ||| | || || ||||| Sbjct 23180 GACACGATTGACAACGTCAAGTCAAAGATTCA-GGACAAGGAGGGCATCCCACCAGACCA 23238 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||||||| |||||||| ||| | || || || Sbjct 23239 GCAGCGTCTCATTTTCGCTGGCAAACAGCTGGAAGACGGCCGGACCCTCTCTGACTACAA 23298 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 23299 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 23331 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 22892 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 22951 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 22952 GATACTATCGACAACGTAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 23011 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || || |||| || ||| || ||| Sbjct 23012 CAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGGACTCTGTCCGACTACAAC 23071 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| Sbjct 23072 ATTCAGAAGGAGTCTACTCTGCACCTCGTACT 23103 >seq427 Length=47822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 19170 CATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTC 19229 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 19230 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 19289 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| | || || Sbjct 19290 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 19325 >seq28 Length=192849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| || Sbjct 42387 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACCATC 42446 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| || || ||||||||| ||| | || || ||||||||||| || Sbjct 42447 GACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGACTG 42506 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| ||||| ||| | || || Sbjct 42507 ATCTTCGCCGGCAAGCAGCTTGAGGA 42532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755974638320