Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1209 122 1e-22 seq561 107 3e-18 >seq1209 Length=374226 Score = 122 bits (134), Expect = 1e-22 Identities = 430/671 (64%), Gaps = 8/671 (1%) Strand=Plus/Minus Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || ||||| | | ||| || |||| | || || || ||||| || |||||||| ||| Sbjct 93341 GGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGATC 93282 Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 || ||||| | || | || | | || ||||| || || ||||| || Sbjct 93281 CAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGG 93222 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 ||||||||| | | | |||| |||||||| || | ||| || || | | || || Sbjct 93221 TCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGGA 93162 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 || ||||| || ||||| || | || | || ||||| || | |||| || ||| ||| Sbjct 93161 CGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGA 93102 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326 | || || ||||| ||||| ||||| || | ||| || || | ||||| ||| Sbjct 93101 GTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATACGG 93042 Query 66327 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 | || || || || || ||||| || ||||| | || ||| || | || Sbjct 93041 TGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCACATGTCTTGAGTGTG 92982 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 |||||||||||||| || || || ||| |||||| | || || || |||| ||| Sbjct 92981 TCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGG 92922 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 | | ||| || ||||| |||| || || || || || || || | || | || Sbjct 92921 GGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGAC 92862 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 66562 | || ||||| ||||| || | || | ||| || |||| || ||||| Sbjct 92861 ATGAGGTTGTAGGTCTCGATGACCCTCTCCACATCATCGCCCCAGATG----CCAACTGC 92806 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 |||||||| | ||||||||| || | || || | ||| || | |||| | ||| Sbjct 92805 AACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTGCCGTCGAGCTTCAGGAGGTA 92746 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || | || || || || || || | ||| ||||| || || || | ||| Sbjct 92745 GGAGCGCTCGAGGGTCTTGAACCCGAAGTATTGGTAGCCGAAGTCGCGATCATAGACAAT 92686 Query 66683 AACCGAGTTGA 66693 |||||| || Sbjct 92685 GGCCGAGTCGA 92675 Score = 95.1 bits (104), Expect = 2e-14 Identities = 351/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Minus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||| || ||||| |||| ||| | | || || || |||||||| Sbjct 94550 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCTGCTGCCTGGGTGCGGAGGTAGTACATG 94491 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACT 64945 || || || |||||||| |||| || || ||||| || || | ||| || | Sbjct 94490 CCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGAT 94431 Query 64946 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 65005 || ||| || ||||| || | || ||| || ||||||||||| || | ||| || Sbjct 94430 -GGCTCTCGCATGTGGATGTTAAGTGACTGAGACTGGTCGATGAAGGCGCCACGGTCAGC 94372 Query 65006 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 65065 |||||| | | || ||| | || | |||||||| | || || || | ||| || Sbjct 94371 AGCCATCTGCACAATTGTCCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGAT 94312 Query 65066 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 65122 ||| | || | | | | ||||||| | ||| || | || || || || | ||||| Sbjct 94311 ATCAGCCGGGATGCTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTT 94252 Query 65123 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 65182 || | ||| ||| || ||| || | | || || || || || || || Sbjct 94251 CATGGCCTCAGACCACAAGCCAAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGAC 94192 Query 65183 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 65242 || || || |||| | || | || ||| || || |||||| || || | | Sbjct 94191 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCA 94132 Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302 ||| || || |||| || || | || |||||||| ||||| ||||||| ||| || || Sbjct 94131 CTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCT 94072 Query 65303 ATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 65361 || | || ||| || | | |||| || | || || | ||||| | ||| || || | Sbjct 94071 GTTGCGAATACCAGTCTCCT-TGATCTTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAG 94013 Query 65362 ACGG 65365 | || Sbjct 94012 AAGG 94009 >seq561 Length=46336 Score = 107 bits (118), Expect = 3e-18 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || || ||||| ||| ||| || ||||| || | | || | ||||||||| Sbjct 8248 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAA 8189 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || ||||| || ||||| ||||||||||| || ||||| || ||||| || || | || Sbjct 8188 AAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 8129 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 ||||| || || || || || || ||||| | || | || |||| || | Sbjct 8128 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCTGGGCATAGGTGGACTCG 8069 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 | ||| || |||||||| ||||||| ||||||||||| Sbjct 8068 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 8031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157406983640