Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq709 122 7e-23 >seq709 Length=37314 Score = 122 bits (134), Expect = 7e-23 Identities = 177/244 (73%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| ||||| || | ||| || || || || |||||| | ||||||||||||| Sbjct 18300 ACGTAGAACTGCGCGAACATGTGGCACGGCGGCAGCGCCATCTTCTTGAGGTCCGCGGGG 18241 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGT--GGGGCCG-CCTGTTAAT-TAGATCCAC 21226 |||||||||| ||| | |||||| || |||| ||| || ||| | | |||| || Sbjct 18240 TTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCTCAGCTTGTGGATC-AC 18182 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286 | || ||||||||| || ||||| ||| |||||| ||| ||| | |||||| Sbjct 18181 CTCGGC---CAGCTGGTCGACGCCCTGGCCCGCGTAGTCGGCCCTGGCGTCTACGTACTC 18125 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGCG 21343 || ||||| || | |||||||||||||||||| || || || |||| |||||||| | Sbjct 18124 GGCGCCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCAAGGTCGCCGGCCTCGCGGTG 18065 Query 21344 GTCC 21347 | || Sbjct 18064 GCCC 18061 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936 |||| |||| ||| || ||||| |||| |||||| | | | || | || ||| Sbjct 18630 ATCTCCAGCTCCGGGAAGTCGCGCGGCTCCCTCTCCAGCTGCACCCGGAGCGCGTCGACG 18571 Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC-AGGCC 20995 |||| ||| ||||| ||||| |||| | |||| | | ||||| ||| | ||| | Sbjct 18570 TGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGG-CTCCCCGGGACGAGGTC 18512 Query 20996 CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 ||||| ||||||| | |||||| || | ||||||||||||||| ||||| || || Sbjct 18511 GCACACGTGCGCGATCATGTGCGTCAGCAGCGAGTAGCTGGCGATGTTGAACGGCACGCC 18452 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 |||||||||||| ||| | |||||||||||||||| Sbjct 18451 CAGGCCCATGTCGCAGGAGCGCTGGTACAGCTGGCAG 18415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766245504080