Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1209 136 6e-27 seq561 134 2e-26 >seq1209 Length=374226 Score = 136 bits (150), Expect = 6e-27 Identities = 378/579 (65%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| || ||||| | | ||| || || | | || || || ||||| Sbjct 93356 CCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATG 93297 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || |||||||| ||||| ||||| | || || || | | || |||||| || || Sbjct 93296 AACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCG 93237 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| || ||||||||| | | | ||||| |||||||| || | ||| || Sbjct 93236 TGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATA 93177 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | || | || ||||| || | Sbjct 93176 GCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAG 93117 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 |||| || ||| ||| | || || ||||| ||||| ||||| || | ||| || || Sbjct 93116 ACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCG 93057 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 ||||||| ||| | || || || || || ||||| || ||||| | || Sbjct 93056 GTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCA 92997 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 ||| || | || |||||||||||||| ||||| || || |||||| | || || Sbjct 92996 CATGTCTTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAG 92937 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || |||| ||| | | ||| || ||||| |||| || || || || || || Sbjct 92936 CAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTG 92877 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTG 80426 || | || | |||| || ||||| ||||| || | || | ||| || | Sbjct 92876 AAGAACTTGTTTGACATGAGGTTGTAGGTCTCGATGACCCTCTCCACATCATCGCCCCAG 92817 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 ||| || || || |||||||| | ||||||||| || Sbjct 92816 ATG----CCAACTGCAACACGCATGATCATGTGCTGTGG 92782 Score = 104 bits (114), Expect = 3e-17 Identities = 353/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Minus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||| || ||||| |||| ||| | | || || || |||||||| Sbjct 94550 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCTGCTGCCTGGGTGCGGAGGTAGTACATG 94491 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACT 78824 || || || |||||||| |||| || ||| ||||| || || | ||| || | Sbjct 94490 CCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGAT 94431 Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884 || ||| || ||||| || | || ||| || ||||||||||| || | ||| || Sbjct 94430 -GGCTCTCGCATGTGGATGTTAAGTGACTGAGACTGGTCGATGAAGGCGCCACGGTCAGC 94372 Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944 |||||| | | || ||| | || | |||||||| | || || || | ||| || Sbjct 94371 AGCCATCTGCACAATTGTCCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGAT 94312 Query 78945 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 79001 ||| | || | | | | ||||||| | ||| || | || || || || | ||||| Sbjct 94311 ATCAGCCGGGATGCTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTT 94252 Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061 || | ||| ||| || ||| || | | || || || || || || || Sbjct 94251 CATGGCCTCAGACCACAAGCCAAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGAC 94192 Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 || || || |||| | || | || ||| || || ||||||||| || | | Sbjct 94191 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCA 94132 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 || || || |||| || || | || ||||| || ||||| ||||||| ||| || || Sbjct 94131 CTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCT 94072 Query 79182 ATTTCTAAGACC-GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAG 79240 || | || ||| || | | |||| || | || || | ||||| ||||| || |||| Sbjct 94071 GTTGCGAATACCAGTCTCCT-TGATCTTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAG 94013 Query 79241 ACGG 79244 | || Sbjct 94012 AAGG 94009 >seq561 Length=46336 Score = 134 bits (148), Expect = 2e-26 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||| |||||| ||||| || | | || || ||||||||| Sbjct 8248 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAA 8189 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || ||||| || ||||| ||||||||||| || ||||| || ||||| || || | || Sbjct 8188 AAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 8129 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 |||||||| || || || || || ||||| || || | || |||| ||| || Sbjct 8128 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCTGGGCATAGGTGGACTCG 8069 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 | ||| || |||||||| ||||||| ||||||||||| Sbjct 8068 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 8031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718252001488440