Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20]
1,871 sequences; 55,029,878 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 131 2e-25
seq561 116 5e-21
>seq1209
Length=374226
Score = 131 bits (144), Expect = 2e-25
Identities = 338/515 (66%), Gaps = 0/515 (0%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || || || || || ||||| | | ||| || || | | | || || |||||
Sbjct 93356 CCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATG 93297
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|| |||||||| ||||| ||||| | || || || | | || |||||| || ||
Sbjct 93296 AACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCG 93237
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| || ||||||||| | | | ||||| |||||||| || | ||| ||
Sbjct 93236 TGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATA 93177
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || ||||| || ||||| || | || | || ||||| || |
Sbjct 93176 GCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAG 93117
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|||| || ||| ||| | || || ||||| | ||| ||||| || | ||| || ||
Sbjct 93116 ACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCG 93057
Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333
||||||| ||| | | || || || || || ||||| || ||||| | ||
Sbjct 93056 GTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCA 92997
Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393
||| || | || |||||||||||||| || || || ||| |||||| | || ||
Sbjct 92996 CATGTCTTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAG 92937
Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453
|| |||| ||| | | ||| || ||||| |||| || || || || || ||
Sbjct 92936 CAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTG 92877
Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488
|| | || | |||| || ||||| ||||| ||
Sbjct 92876 AAGAACTTGTTTGACATGAGGTTGTAGGTCTCGAT 92842
Score = 100 bits (110), Expect = 4e-16
Identities = 320/493 (65%), Gaps = 5/493 (1%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || ||||| ||||| | || ||| || | || || || |||||||||
Sbjct 94550 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCTGCTGCCTGGGTGCGGAGGTAGTACATG 94491
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907
|| || || |||||||| |||| || || ||||| || || | ||| || | |
Sbjct 94490 CCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGAT 94431
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
|| || ||||| || || | |||||| || ||||||||||| || | ||| ||
Sbjct 94430 -GGCTCTCGCATGTGGATGTTAAGTGACTGAGACTGGTCGATGAAGGCGCCACGGTCAGC 94372
Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027
|||||| | | || ||| | || | |||||||| | || || || | ||| ||
Sbjct 94371 AGCCATCTGCACAATTGTCCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGAT 94312
Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084
||| | || | | | | ||||||| | ||| || | || || || || | || ||
Sbjct 94311 ATCAGCCGGGATGCTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTT 94252
Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144
|| | ||| ||| || ||| || | | || || || ||| || || ||
Sbjct 94251 CATGGCCTCAGACCACAAGCCAAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGAC 94192
Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204
|| || || |||| | || | || ||| || || |||||| || || | |
Sbjct 94191 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCA 94132
Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264
||| || || |||| || || | || |||||||| ||||| ||||||| ||| | ||
Sbjct 94131 CTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCT 94072
Query 71265 ATTTCTAAGACCA 71277
|| | || ||||
Sbjct 94071 GTTGCGAATACCA 94059
>seq561
Length=46336
Score = 116 bits (128), Expect = 5e-21
Identities = 157/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115
|||| || || ||||| ||| |||||| |||||||| | | || | |||||||||
Sbjct 8248 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAA 8189
Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175
|| ||||| || ||||| ||||||||||| || ||||| || || || || || | ||
Sbjct 8188 AAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 8129
Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232
|||||||| || || || || || ||||| | || | || |||| || |
Sbjct 8128 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCTGGGCATAGGTGGACTCG 8069
Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270
| ||| || |||||||| ||||||| |||||||||||
Sbjct 8068 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 8031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671123503731960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |