Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1209 131 2e-25 seq561 116 5e-21 >seq1209 Length=374226 Score = 131 bits (144), Expect = 2e-25 Identities = 338/515 (66%), Gaps = 0/515 (0%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | | ||| || || | | | || || ||||| Sbjct 93356 CCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATG 93297 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || |||||||| ||||| ||||| | || || || | | || |||||| || || Sbjct 93296 AACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCG 93237 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || ||||||||| | | | ||||| |||||||| || | ||| || Sbjct 93236 TGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATA 93177 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | || | || ||||| || | Sbjct 93176 GCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAG 93117 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| || ||| ||| | || || ||||| | ||| ||||| || | ||| || || Sbjct 93116 ACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCG 93057 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 ||||||| ||| | | || || || || || ||||| || ||||| | || Sbjct 93056 GTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCA 92997 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 ||| || | || |||||||||||||| || || || ||| |||||| | || || Sbjct 92996 CATGTCTTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAG 92937 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || |||| ||| | | ||| || ||||| |||| || || || || || || Sbjct 92936 CAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTG 92877 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 || | || | |||| || ||||| ||||| || Sbjct 92876 AAGAACTTGTTTGACATGAGGTTGTAGGTCTCGAT 92842 Score = 100 bits (110), Expect = 4e-16 Identities = 320/493 (65%), Gaps = 5/493 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||| ||||| | || ||| || | || || || ||||||||| Sbjct 94550 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCTGCTGCCTGGGTGCGGAGGTAGTACATG 94491 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || |||||||| |||| || || ||||| || || | ||| || | | Sbjct 94490 CCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGAT 94431 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || ||||| || || | |||||| || ||||||||||| || | ||| || Sbjct 94430 -GGCTCTCGCATGTGGATGTTAAGTGACTGAGACTGGTCGATGAAGGCGCCACGGTCAGC 94372 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 |||||| | | || ||| | || | |||||||| | || || || | ||| || Sbjct 94371 AGCCATCTGCACAATTGTCCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGAT 94312 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 ||| | || | | | | ||||||| | ||| || | || || || || | || || Sbjct 94311 ATCAGCCGGGATGCTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTT 94252 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 || | ||| ||| || ||| || | | || || || ||| || || || Sbjct 94251 CATGGCCTCAGACCACAAGCCAAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGAC 94192 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 || || || |||| | || | || ||| || || |||||| || || | | Sbjct 94191 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCA 94132 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 ||| || || |||| || || | || |||||||| ||||| ||||||| ||| | || Sbjct 94131 CTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCT 94072 Query 71265 ATTTCTAAGACCA 71277 || | || |||| Sbjct 94071 GTTGCGAATACCA 94059 >seq561 Length=46336 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||| |||||| |||||||| | | || | ||||||||| Sbjct 8248 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAA 8189 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || ||||| || ||||| ||||||||||| || ||||| || || || || || | || Sbjct 8188 AAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 8129 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 |||||||| || || || || || ||||| | || | || |||| || | Sbjct 8128 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCTGGGCATAGGTGGACTCG 8069 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | ||| || |||||||| ||||||| ||||||||||| Sbjct 8068 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 8031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123503731960