Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1209 161 1e-34 seq561 141 1e-28 >seq1209 Length=374226 Score = 161 bits (178), Expect = 1e-34 Identities = 332/487 (68%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | || | ||| | || || |||||||| || Sbjct 93145 CAGGGTGGCAACAAGCGTCCCGGTGCCTTCGCTATTTACCTCGAGCCGTGGCACGCTGAT 93204 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| |||| || ||| || || ||| ||||| | ||| Sbjct 93205 GTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGTAAGGAGGAGATCCGAGCTCGTGAC 93264 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || ||| |||||| | || ||| ||||||||||||| ||| || |||||| Sbjct 93265 CTTTTCCTTGCTCTCTGGATCCCTGATCTGTTCATGAAGCGGGTCGAGAAGAACGGTG-- 93322 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| ||| ||||||||| || || || || || |||| |||| || || ||| Sbjct 93323 -ACTGGACCCTTATGTGCCCCAACGAGTGCCCGGGCCTCGCCGACTGCTACGGTGAGGAG 93381 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGC 97171 ||||||||| ||| | |||||||| |||||||| ||| |||| | | || | Sbjct 93382 TTTGAGGCCCTCTACGAGAAGTACGAGCAGGAGGGCCGCGGCCGTAAGAC-ACT-GAAGG 93439 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| |||||| | |||||| | ||||||| |||||||| | || | || | Sbjct 93440 CCCAGAAGCTGTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGTAACCCCTTTATGC 93499 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 | ||||| ||| || || || || |||||||| || ||||||||||| ||| Sbjct 93500 TGTACAAAGATCACGCAAACCGGAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCT 93559 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350 | || || ||||| || || | |||||| | | ||||| ||| || || ||| | Sbjct 93560 CTAACCTCTGCACCGAGATCATCGAGTACTCGGCCCCGGATGAGGTCGCTGTCTGCAACC 93619 Query 97351 TGGCATC 97357 |||| || Sbjct 93620 TGGCTTC 93626 >seq561 Length=46336 Score = 141 bits (156), Expect = 1e-28 Identities = 318/471 (68%), Gaps = 19/471 (4%) Strand=Plus/Plus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||||||| | ||| | |||| | || ||| | | ||||| || ||||| ||||| || Sbjct 8054 GTGGATCCAGGACCGCGAGTCCACCTATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGA 8113 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 |||||||||||| || || || ||||||| |||||||||||||| || ||||| Sbjct 8114 GGGCATCTTCTTCAGCGGCGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCAT 8173 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || || || |||||| |||| ||||| || |||||||| ||| ||||| Sbjct 8174 GCCTGGTCTCACCTTTTCCAACGAGCTTATCTCTCGTGATGAGGGCCTGCACACCGACTT 8233 Query 125570 TGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627 ||| || ||||| ||||| || | | ||| || | ||||| | || Sbjct 8234 CGCCTGCCTGCTGTTCTCGCACCTCAGGAACCGCCCAAG----CAAGCAGCG-CGTCCAG 8288 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 | ||||| | || || ||||| | ||| || | || || || ||||| |||| Sbjct 8289 GACATCA------TCACTGAGGCCGTCATGATCGAGAAGGAATTCCTGACCGAGGCCCTT 8342 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || | | || | |||||||||| ||| || ||| ||||||| ||||| || || Sbjct 8343 CCATGCGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCC 8402 Query 125748 GATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTT 125804 || || || ||| || || ||| || ||| | ||||| | ||| ||||| Sbjct 8403 GACCGCCTCCTGGTCGCTCTG---GGCAACGAGAAGGTGTACAAGTCGTCGAACCCCTTC 8459 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || |||||| | ||| || || | || ||||||||||| ||||||||| Sbjct 8460 GACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAG 8510 Score = 134 bits (148), Expect = 2e-26 Identities = 202/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||| | |||| || || ||||| | |||||| ||||||| Sbjct 7624 ATCTGGCAAATGTACAAGAAGCATGAGGCTTCTTTCTGGACCGCTGAAGAGATCGATCTC 7683 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | || |||| || |||||| | || | || Sbjct 7684 TCCAAGGATCTCCACGACTGGAGCAACCGCCTGACCGATGATGAGCGTTACTTCGTCTCC 7743 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | |||||||| |||| || ||||| ||||||||||| || ||| || || Sbjct 7744 CACATCCTCGCCTTCTTCGCCGCTTCAGATGGCATCGTCAACGAGAACCTGGTGGAGCGC 7803 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || || |||| ||||| ||||| ||||| |||||||| Sbjct 7804 TTCAGCGGCGAGGTCCAAATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATG 7863 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| | ||||| || | ||| ||| || ||||||| ||||| Sbjct 7864 GAGAACATCCACTCCGAGACGTATTCTTTGCTCATTGACACCTACAT 7910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041868477960