Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq709 96.9 2e-15 >seq709 Length=37314 Score = 96.9 bits (106), Expect = 2e-15 Identities = 173/244 (71%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 25796 |||||| || || ||| |||| |||||| ||||| ||| |||||| || || || Sbjct 18175 CAGCTGGTCGACGCCCTGGCCCGCGTAGTCGGCCCTGGCGTCTACGTACTCGGCGCCAAA 18116 Query 25797 ATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCC 25856 | || |||||||||||||||||| || || ||||| || | || | ||| | |||| Sbjct 18115 GTGCCGCCACTGGAACCCGTACACGGGGCCAAGGTCGCCGGCCTCGCGGTG-GCCCAGCC 18057 Query 25857 CCTC-TTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGG 25915 | | | || | | || | || || ||| ||||||||||||| ||||||| ||| | Sbjct 18056 CGACGCTGTCGAGGTACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACCCCCTGCTCCG 17997 Query 25916 AGAGC-TCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGG 25972 ||||| | | ||| ||| | ||| | | |||||||||||||||||| ||| | Sbjct 17996 AGAGCGACAGCGACGAG-GTGTCG-CCCGAT-ATGAACCACAGCAGCTCCGCGAGGACCG 17940 Query 25973 CCTT 25976 |||| Sbjct 17939 CCTT 17936 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 ||||||||||| ||||| | |||| || ||||| ||| ||||||||| ||||| Sbjct 18606 GGCTCCCTCTCCAGCTGCACCCGGAGCGCGTCGACGTGGTCCGCGTAGACGTGCGCGTCG 18547 Query 25461 CCCAGAGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGT 25519 |||| ||| | | ||| ||||| | || || |||| || ||||||| ||| Sbjct 18546 CCCATGACGTGCGTGAGGCTC-CCCGGGACGAGGTCGCACACGTGCGCGATCATGTGCGT 18488 Query 25520 GAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCT 25579 || || |||||||||||||||| || || || || | ||||||| | | || | || Sbjct 18487 CAGCAGCGAGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATGT-CGCAGGAGCGCT 18429 Query 25580 GGTAGAGCTGACA 25592 |||| ||||| || Sbjct 18428 GGTACAGCTGGCA 18416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129843906083