Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1209 149 6e-31 seq427 129 6e-25 seq1489 116 3e-21 seq561 111 1e-19 seq28 96.9 3e-15 >seq1209 Length=374226 Score = 149 bits (164), Expect = 6e-31 Identities = 821/1294 (63%), Gaps = 37/1294 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||| || | |||||| ||| || | ||| || || | || Sbjct 94199 TTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGC 94140 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||||||||| || | ||| | ||| || |||||| |||| | Sbjct 94139 TCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATC 94080 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || || ||||| | || || |||||| | |||| || | |||| ||||| Sbjct 94079 AACAAGCTGTTGCGAATACCAGTCTCCTTGATCTTGGCCTTGAGGGCGTCCCAGTCCCAC 94020 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| | |||| |||||||||| |||| | ||||||| |||||||| Sbjct 94019 AGGTCAGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATGCCCTGCGACACGGGGCTG 93960 Query 145298 CCTTGAAAGGAACTGTAACTGCC--CCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | |||| |||| ||| ||||| | |||| || |||| Sbjct 93959 CCCTCGTATGTCTTGTATGTGCCTTCCA--CCTTGGCAATGTCGCTGGATGCTGTGAGAG 93902 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | || || |||||| |||||| |||| ||| ||| || | ||| Sbjct 93901 CAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGCGCCTCGGGGGAATCGA 93842 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | ||||| || || | || |||||||| || ||||| | || || || || || | Sbjct 93841 AGGGCATACGAAGAGCCAAGAATGCATCGGCAAGACCCTGAACGCCGACACCAATAGGTC 93782 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 | ||| ||||||||| | ||| || | || || | || |||||||| | Sbjct 93781 GGTGTCGCATGTTGCTGTTGTATGCCTCCTTCACCGGGTAGTGGTTGACATCGATAATCT 93722 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAG 145595 | |||||||| || || || |||| || | | ||| || | |||| | | Sbjct 93721 TGTTCAAGTTGCGGACGACAACCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGTAGCAGT 93662 Query 145596 CCTCGTC---AACGAC-CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651 | ||| | |||| | | | | || || || || |||| || || || || Sbjct 93661 TGTTGTCATAATCGACGTATGCCGGCA--GA--GCAATGGAAGCCAGGTTGCAGACAGCG 93606 Query 145652 GTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATG 145708 ||| || | | | ||| | | |||||||| ||| | || ||| | |||| Sbjct 93605 ACCTCATCCGGGGCCGAGTACTCGATGATCTCGGTGCAGAGGTTAGAGCTGC---GGATG 93549 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTG-TTGCACGCGTCCTTGTAGAGCATGTACGG 145767 || ||||| || | ||| || || |||| | |||| | || ||||| ||||| | || Sbjct 93548 GTGCCCAGGTTCTTCTGGTTGCTCTTCCGGTTTGCGTG-ATCTTTGTACAGCATAAAGGG 93490 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTG 145827 |||||||| ||| | ||| | ||| | || | ||| || || Sbjct 93489 GTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCACAGCTTCTGGGCCTTCAGTGT 93430 Query 145828 CTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTA 145887 || || ||||||||| | ||||| ||| |||||| |||||||| | |||||| Sbjct 93429 CTTACGGCCGCGGCCCTCCTGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCTCACCGTA 93370 Query 145888 GCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTT 145947 ||| |||| ||||| || |||| |||||| ||||| || | ||| | ||||| | Sbjct 93369 GCAGTCGGCGAGGCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTC 93310 Query 145948 GACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCA 146007 ||| |||| ||| |||| ||| || | ||| || || | | ||| || ||| | Sbjct 93309 GACCCGCTTCATGAACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGAT 93250 Query 146008 ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACG 146066 ||||| ||| ||| | || | || | ||| ||| || |||||||||| Sbjct 93249 CTCCTCCTTACCGTGGTTCTTCCGCAGGTCGAGGA-ACTCGAAGACATCAGCGTGCCACG 93191 Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | |||| ||| || || |||||||||||||| || | ||| Sbjct 93190 GCTCGAGGTAAATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAACGGG 93131 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT---AG 146180 | ||||||| ||||| |||| |||||| || |||| ||| ||||| || || Sbjct 93130 CAGTGTTGTTGAAGACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAG 93071 Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGT 146240 | || | |||| || || | | || || |||| ||||| || ||| | Sbjct 93070 CG---ATGTACGAGCCGGTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCGGCCA 93014 Query 146241 ACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GC 146297 |||||| || ||| || ||| ||| || || |||||||| || ||||| || | Sbjct 93013 TCTTGGAGATCATGGCACATGTC-TTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCC 92955 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTG 146331 ||| ||| ||| || ||||| || ||| ||| Sbjct 92954 TTC--ATGTCGACGAGGAAGCAAGATGACAGCTG 92923 >seq427 Length=47822 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 19397 CCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19338 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 19337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19278 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 19277 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19218 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || || || || || || ||||| |||||||||| Sbjct 19217 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGA 19169 >seq1489 Length=43664 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || | || | || |||||||| ||||||||||| ||| | Sbjct 23118 CCACCGCGGAGGCGGAGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 23059 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 23058 AGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGG 22999 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | |||||| | |||||||| Sbjct 22998 ATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACC 22939 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 22938 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| || || | ||||||||||| || |||||||| || Sbjct 23346 CCGCCACGGAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAG 23287 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||| ||||| ||| | || | |||||||||||| || ||| Sbjct 23286 AGGGTCCGGCCGTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGG 23227 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| | | || ||||| | || | || || | ||||| | Sbjct 23226 ATGCCCTCCTTGTC-CTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCAC 23168 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || || || || || |||||||| Sbjct 23167 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTGCAT 23120 >seq561 Length=46336 Score = 111 bits (122), Expect = 1e-19 Identities = 338/517 (65%), Gaps = 19/517 (4%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | |||||||| |||||||||| ||||||||||| ||| ||||||| | Sbjct 8019 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATC-----CAGGACCGCGAGT 8073 Query 46147 -----TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 | ||| |||| |||| ||||| || || |||||| |||| || ||| Sbjct 8074 CCACCTATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCG 8133 Query 46202 GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 || ||| ||||||| | |||| | ||| ||||||| || || || ||| || Sbjct 8134 CCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTTCCA 8193 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAAC 46320 ||||||| || || || || ||||||||||| || ||||| || || || || | | | Sbjct 8194 ACGAGCTTATCTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGC 8253 Query 46321 A-CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGT 46379 | ||| | | ||||| || | ||| | | ||| ||| ||||| || Sbjct 8254 ACCTCAGGAACCGCCCAAGCAAGC-----AGCGCGTCCAGGACATCATCACTGAGGCCGT 8308 Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439 || |||||||| || | || | || || || |||||||| ||||||||| | Sbjct 8309 CATGATCGAGAAGGAATTCCTGACCGAGGCCCTTCCATGCGCCCTGCTCGGCATGAACTC 8368 Query 46440 ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCA 46499 | ||| | ||||| ||||| || || ||||| || || || || | | Sbjct 8369 CAACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCCTGGTCGCTCTGGGCAA 8428 Query 46500 GCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 |||| | | || | || || || || || || ||| | ||||||||||| | | Sbjct 8429 CGAGAAG-GTGTACAAGTCGTCGAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTG 8487 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 |||| || || || ||||| ||||| ||||| || || Sbjct 8488 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 8524 >seq28 Length=192849 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| ||| Sbjct 42567 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 42508 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| || || ||||| ||| ||| ||||| | | Sbjct 42507 TCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGT 42448 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||| | |||| ||| | ||| || || || || || || |||| Sbjct 42447 CGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 42388 Query 131225 A 131225 | Sbjct 42387 A 42387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001760800640