Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq858 138 8e-28 >seq858 Length=214325 Score = 138 bits (152), Expect = 8e-28 Identities = 208/293 (71%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCG-CATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 ||| | |||||||||||||| ||| ||| | || | | ||||||||||| ||||| || Sbjct 170093 GACCCCTTCTACCGCTACAAGATGGAGCGTCTTCAGA-CAAAGGTCGAGGGCAAGGGCAA 170035 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 |||||| || |||||||| |||||| | | ||||| || | |||| ||||| | Sbjct 170034 CGGTATCAAGACCGTCATCGTCAACCTCACCAGCGTCGCCCAGTCCCTCGCCCGCCCCGG 169975 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | ||||| || || || ||||| | ||| |||||||| ||||| | | || | ||| Sbjct 169974 CTCCTACTTGATCAAGTACTTCGGCTTCGAGCTTGGCGCCCAGACCAACATCGACCCCAA 169915 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 | || || | ||| | ||||| | || | ||| ||||||| |||||| | ||||| Sbjct 169914 GGATGATCGTTGGATCATCAACGGTGCCCACGAGTCTCCCAAGCTCCAGGACCTTCTTGA 169855 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 ||||| || | ||| || ||||| | | ||| | ||||| ||||||| Sbjct 169854 TGGCTTCATCAAGAGGTTCGTCCTGTGCCACAAGTGCCACAACCCAGAGACCG 169802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939562261801