Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1209 136 5e-27 seq561 113 6e-20 >seq1209 Length=374226 Score = 136 bits (150), Expect = 5e-27 Identities = 444/689 (64%), Gaps = 8/689 (1%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||| | | ||| || |||| | || || || ||| Sbjct 93359 AGGCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTC 93300 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || || |||||||| ||||| ||||| | || || || | | || ||||| || Sbjct 93299 ATGAACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTA 93240 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || ||||||||| | | | ||||| |||||||| || | ||| Sbjct 93239 CCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAA 93180 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 || || | | || || || ||||| || ||||| || | || | || ||||| || Sbjct 93179 ATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTG 93120 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | |||| || ||| ||| | || || ||||| ||||| ||||| || | ||| || Sbjct 93119 AAGACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAG 93060 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || ||||||| ||| | || || || || || ||||| || ||||| | Sbjct 93059 CCGGTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATG 93000 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || ||| || | || |||||||||||||| || || || ||| |||||| | || Sbjct 92999 GCACATGTCTTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGG 92940 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || || |||| ||| | | ||| || ||||| |||| || || || || || Sbjct 92939 AAGCAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGG 92880 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCA 63555 || || | || | || | || ||||| ||||| || | || | ||| || Sbjct 92879 GTGAAGAACTTGTTTGACATGAGGTTGTAGGTCTCGATGACCCTCTCCACATCATCGCCC 92820 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 |||| || ||||| |||||||| | ||||||||| || | || || | ||| Sbjct 92819 CAGATG----CCAACTGCAACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTGCC 92764 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 || | |||| | |||||| || | || || || || || || | ||| || Sbjct 92763 GTCGAGCTTCAGGAGGTAGGAGCGCTCGAGGGTCTTGAACCCGAAGTATTGGTAGCCGAA 92704 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGA 63704 ||| || || || | ||| |||||| || Sbjct 92703 GTCGCGATCATAGACAATGGCCGAGTCGA 92675 Score = 100 bits (110), Expect = 4e-16 Identities = 352/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Minus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||| | ||||| || ||||| |||| ||| | | || || || |||||||| Sbjct 94550 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCTGCTGCCTGGGTGCGGAGGTAGTACATG 94491 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACT 61956 || || || |||||||| |||| || || ||||| || || | ||| || | Sbjct 94490 CCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGAT 94431 Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016 || ||| || ||||| || | || ||| || ||||||||||| || | ||| || Sbjct 94430 -GGCTCTCGCATGTGGATGTTAAGTGACTGAGACTGGTCGATGAAGGCGCCACGGTCAGC 94372 Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62076 |||||| | | ||| ||| | || | |||||||| | || || || | ||| || Sbjct 94371 AGCCATCTGCACAATTGTCCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGAT 94312 Query 62077 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62133 ||| | || | | | | ||||||| | ||| || | || || || || | ||||| Sbjct 94311 ATCAGCCGGGATGCTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTT 94252 Query 62134 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62193 || | ||| ||| || ||| || | | || || || || || || || Sbjct 94251 CATGGCCTCAGACCACAAGCCAAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGAC 94192 Query 62194 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 62253 || || || |||| | || | || ||| || || |||||| || || | | Sbjct 94191 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCA 94132 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 ||| || || |||| || || | || |||||||| ||||| ||||||| ||| || || Sbjct 94131 CTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCT 94072 Query 62314 ATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 || | || ||| || | | |||| || | || || | ||||| | ||| || || | Sbjct 94071 GTTGCGAATACCAGTCTCCT-TGATCTTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAG 94013 Query 62373 ACGG 62376 | || Sbjct 94012 AAGG 94009 >seq561 Length=46336 Score = 113 bits (124), Expect = 6e-20 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || ||||| ||| ||| || ||||| || | | || | ||||||||| Sbjct 8248 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAA 8189 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || ||||| || ||||| ||||||||||| || ||||| || ||||| || || | || Sbjct 8188 AAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 8129 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 32828 ||||| || || || || || || ||||| | || | || |||| || || Sbjct 8128 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCTGGGCATAGGTGGACTCG 8069 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 | ||| || |||||||| ||||||| ||||||||||| Sbjct 8068 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 8031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633617180931600