Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq120 111 3e-19 seq561 98.7 2e-15 >seq120 Length=181195 Score = 111 bits (122), Expect = 3e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || |||||||| || || ||||| ||||| || |||| ||||||||||| ||| ||| Sbjct 149539 GACCTGTGTGAGTGCGAGTTCTCCCTCGCCTACGGTGCCAAGATTCTGCTCAACAACACC 149598 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 ||| || | ||||||||||| || || |||||| ||| ||||| || || || ||| Sbjct 149599 CGCATCCGCCTCAAGCGTGGCCGTCGTTACGGTCTCTGCGGCCCCAACGGTGCCGGAAAG 149658 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGA 279529 || || ||||| ||||| |||| ||| | | ||| ||||| | ||| || Sbjct 149659 TCTACCCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCAGAGCGA 149717 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||| | ||| |||| || ||||||||| | ||| || || Sbjct 149718 GGTCAAGACTGTGTTCGTTGAGCACGACCTTGACGCCGCT 149757 >seq561 Length=46336 Score = 98.7 bits (108), Expect = 2e-15 Identities = 241/363 (66%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| | Sbjct 8506 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTCGAC 8447 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | ||| || || || | || |||||| || || ||||| | Sbjct 8446 GACTTGTACACCTTCTCGTTGCCCAGAGCGACCAGGAGGCGGTCGGCGACGAACTCAATG 8387 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | || || |||| ||||| | | Sbjct 8386 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCGCATGGAAGGGCCTCGGTCAGG 8327 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACAG 251801 |||||||| ||| | || ||||| | || ||| || | ||| | | Sbjct 8326 AATTCCTTCTCGATCATGACGGCCTCAGTGATGATGTCCTGGACGCGCTGCTTGCTTGGG 8267 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 | |||| || | ||| |||| || | | || | |||||| ||||| || || Sbjct 8266 C-GGTTCCTGAGGTGCGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACG 8208 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 | ||| | ||||||||| | || |||||||| | ||||| ||| |||||||||| Sbjct 8207 AGAGATAAGCTCGTTGGAAAAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAA 8148 Query 251922 GAT 251924 ||| Sbjct 8147 GAT 8145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027812160503511