Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq427 183 6e-41 seq1489 179 7e-40 seq28 147 4e-30 seq561 136 7e-27 seq120 127 4e-24 seq756 111 3e-19 >seq427 Length=47822 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | ||| || |||||||| || |||||||| || |||||| Sbjct 19397 CCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19338 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 19337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19278 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 19277 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19218 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || |||||||||||||| ||||| |||||||| ||| Sbjct 19217 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 19167 >seq1489 Length=43664 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || |||| |||||||| ||||| ||||| || |||||||| || || || Sbjct 23347 TCCGCCACGGAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGA 23288 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| |||| || ||||| | ||| || || ||||| ||||| | || ||||| ||||| Sbjct 23287 GAGGGTCCGGCCGTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGG 23228 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| |||||||| |||||||||| ||||||| || || ||||| | || || || Sbjct 23227 GATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCAC 23168 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||| || || ||||| ||||||||||| || ||||||||| Sbjct 23167 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTGCATT 23119 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| ||||| ||||| | ||| | ||| || || ||||| || || ||||| || |||| Sbjct 23120 TTCCACCGCGGAGGCGGAGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGG 23061 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || |||| ||||| || | |||||| || || || ||||| | || ||||| || | Sbjct 23060 ACAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGG 23001 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||| |||||||| |||||||| | ||| ||| ||||| || || | || || | Sbjct 23000 GGATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGA 22941 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 22940 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || || |||||||| || |||||| Sbjct 22890 CCGCCACGGAGACGAAGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 22831 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | || || || || || Sbjct 22830 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGGGGGG 22771 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| ||| ||||| || || | || || || Sbjct 22770 ATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACC 22711 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 22710 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22664 >seq28 Length=192849 Score = 147 bits (162), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 42565 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 42506 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| || ||||| || || ||||| |||||||| || ||||| | ||||||| ||| Sbjct 42505 AGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCG 42446 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 42445 ATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 42387 >seq561 Length=46336 Score = 136 bits (150), Expect = 7e-27 Identities = 312/463 (67%), Gaps = 10/463 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| ||||||||||| || || || |||||||||||||| |||||| | Sbjct 8543 CATGACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 8484 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC--AAACTGCTTGGGGTAA 10052 |||||| ||| |||||||||||| ||||||| ||| || | || ||| || Sbjct 8483 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGT--TCGACGACTTGTACACCTTCTCGTTG 8426 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || | | |||||| || |||||||| |||||||| |||| |||| ||| Sbjct 8425 CCCAGAGCGACCAGGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTTGGAG 8366 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | || | ||| || | ||| ||| | ||| ||||| ||| | ||| Sbjct 8365 TTCATGCCGAGCAGGGCGCATGGAAGGGCCTCGGTCAGGAATTCCTTCTCGATCATGACG 8306 Query 10173 GCTTCCTCGACGATGCTCTTTAC-CACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || || || |||| || || | | | | || |||| ||| | ||| | Sbjct 8305 GCCTCAGTGATGATGTCCTGGACGCGCTGCTTGCTTGGGC-GGTTCCTGAGGTGCGAGAA 8247 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 ||| || | || | ||| |||||||| || || ||| | ||||||||| || Sbjct 8246 CAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAAAA 8187 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351 ||||| |||||||| || || || |||||||| |||| | ||| | ||| Sbjct 8186 GGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCT 8127 Query 10352 GAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCT 10392 || |||||| ||||| ||| | ||||||| ||||||| Sbjct 8126 GA--AGAAGATGCCCTCGACGGCAGCGAAGGCGACCAGGCGCT 8086 >seq120 Length=181195 Score = 127 bits (140), Expect = 4e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 225752 GTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGA 225810 ||||| || | | ||| ||||||| |||||| || ||| |||| ||| || || | Sbjct 149771 GTCATCTCAGTGTCAGCGGCGTCAAGGTCGTGCTCAACGAACACAGTCTTGACCTCGCTC 149712 Query 225811 AGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCC 225870 || | |||||| ||||| | ||| | || || ||||| | |||||| ||| || Sbjct 149711 TGCTT-GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGGGTAGACTTTCC 149653 Query 225871 CGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGA 225930 || |||||||| ||| ||| |||||| || || ||||||| | || ||| ||| Sbjct 149652 GGCACCGTTGGGGCCGCAGAGACCGTAACGACGGCCACGCTTGAGGCGGATGCGGGTGTT 149593 Query 225931 GTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 ||| || || |||||| |||| ||||| |||||||||||||| || |||||||| Sbjct 149592 GTTGAGCAGAATCTTGGCACCGTAGGCGAGGGAGAACTCGCACTCACACAGGTC 149539 >seq756 Length=109137 Score = 111 bits (122), Expect = 3e-19 Identities = 364/559 (65%), Gaps = 19/559 (3%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||| |||||||| ||| ||||| || || || ||||||| |||| || Sbjct 61528 CCAGTGTGCACGTCCTCCGAGAACCCAATTTCGGCCGTACCGCCGACCTCCTCAAGAGCA 61469 Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACG---GCGCCGCCAAAGGTGTCGC 59411 | || || || | ||||| | |||||||| | | ||||| ||| || || Sbjct 61468 GCACGACGATACAA--CGCATTACTTCCGACGCAGATGCTCGCGCC-CCACCTGTTTCTG 61412 Query 59412 GAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCC 59471 || |||||| | ||||||||||| ||||| | ||||| | |||| |||| Sbjct 61411 TTGA--CCTGGACAACGCGGTAGAACAGCTCCTGCGTCGCGCCAGCGCCCTGCTCCACCC 61354 Query 59472 AAGTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGT 59531 | ||||| ||| | || ||||||||| ||| ||||||| || |||| |||| ||| Sbjct 61353 AGGTCTGCTCGTCGGTGACACGGAAGAACTGCGGGCTCTGCACGATGGCGACCTTGTCGT 61294 Query 59532 CATGGGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591 | | | | ||| | ||||||||| |||| |||||||| || ||||| || | Sbjct 61293 CGTCCAGCTGCTCGACCATCAGCTCCTTGAGGAAGTCCGGGCGCGGGCAAAAGTCCGCGT 61234 Query 59592 CGAAGATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCT 59651 |||||||||| |||||| | | | ||| || || | || |||||||| |||| Sbjct 61233 CGAAGATGGCGAAGAAGTTGCCGCTCGTCCGGGCAAAGGTCCACCGCAGGTTGCCCGCCT 61174 Query 59652 TTTT---CATGTGGTTGTTTTCACGGGTAATGTAATTGAAGCCAAACCGCTGGGCGAGAT 59708 | || | | | || || || |||| |||||||| | || || || | Sbjct 61173 TCTTGAGCCGGGGCCGGTCCTCGCGCACCGTGTAGTTGAAGCCGTAGCGTGCTGCCAGCT 61114 Query 59709 CCCGGATCTTGGGGTCTTTCTTGTCATCGAGGACATAGAC---AGTCTTG---GTGGGCC 59762 |||||| | |||| | |||||| | ||| | ||| ||||| | |||| Sbjct 61113 CCCGGACCACCGGGTTGGCCCCGTCATCCATGACGTGGACCTGGATCTTGTCCGCCGGCC 61054 Query 59763 AGTCTAGAGCAGTGACGTAGGTCCAGGTGTTGTGAATAACCTCGAGGTCTTCGCCGCACA 59822 |||| || ||||||| |||| ||||||| | | ||||| || ||| | |||| Sbjct 61053 AGTCCAGGCGCGTGACGTGCTTCCACGTGTTGTCCAGGATCTCGACCTCCTCGGCACACA 60994 Query 59823 CGGGAAGAAGGATGTCTAC 59841 | || || |||||| || Sbjct 60993 CTGGGAGGTAGATGTCCAC 60975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921600845556120